Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq606 161 1e-34 seq495 161 1e-34 seq1041 123 3e-23 seq576 120 3e-22 seq428 95.1 1e-14 seq406 86.0 7e-12 seq855 82.4 9e-11 >seq606 Length=277477 Score = 161 bits (178), Expect = 1e-34 Identities = 156/198 (79%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| || || ||||||||||| || || || |||| ||||| ||||||||| Sbjct 253494 GTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCGAGTTGCTTGCCG 253435 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| |||||||||||||| |||| ||| | || |||||| ||| ||||||| |||| Sbjct 253434 GCGAAAATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTTATCCTGGATCTTCGCCTTG 253375 Query 46517 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | ||| | | | |||||| || ||||| || | ||||| || |||||||||| ||| Sbjct 253374 A-CGTTGTCGATCGTGTCCGAAGACTCCACTTCAAGAGTGATAGTCTTGCCCGTCAACGT 253316 Query 46576 TTTAACAAAGATTTGCAT 46593 ||||| ||||| ||||| Sbjct 253315 CTTAACGAAGATCTGCAT 253298 Score = 140 bits (154), Expect = 4e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || || || | || |||||||||||||| || || Sbjct 253208 CTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGCTGCTTGCCCGCAAA 253149 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | | |||||||||| ||||||| ||||| | Sbjct 253148 GATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 253089 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||||| ||| || || || | ||||||||| ||||| |||| || || || Sbjct 253088 ATCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAAGGTCTTGAC 253029 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 253028 AAAGATCTGCAT 253017 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || || ||||| |||||||||||||| || || |||||| |||| |||||||||||||| Sbjct 253777 GTGCTTTCCTTCTGGATATTGTAGTCAGAGAGCGTGCGCCCGTCCTCGAGCTGCTTGCCC 253718 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| || | ||||| ||||||| || | || |||||||||| ||||| ||| Sbjct 253717 GCGAAGATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTC 253658 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||| || || || |||| |||||| || |||||||| || || Sbjct 253657 ACGTTATCGATCGTGTCCGAGGACTCGACTTCCAACGTGATCGTCTTGCCCGTGAGTGTC 253598 Query 46577 TTAACAAAGATTTGCAT 46593 || || || || ||||| Sbjct 253597 TTGACGAATATCTGCAT 253581 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || |||||| |||| |||||||||||||| ||||| Sbjct 252918 CTCCTTCTGGATGTTGTAGTCCGAGAGTGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAA 252859 Query 46462 TATCAAGCGCTGCTGGTC 46479 || | |||||||||||| Sbjct 252858 GATAAGGCGCTGCTGGTC 252841 >seq495 Length=337734 Score = 161 bits (178), Expect = 1e-34 Identities = 151/192 (79%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || |||||||||||||| ||||| || |||| |||||||||||||||||||| Sbjct 131677 CTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAA 131736 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||||| ||| | || |||||||||| |||||| ||||| | Sbjct 131737 GATTAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 131796 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| ||| ||||| || | ||||| || |||||||| || || || || Sbjct 131797 GTCAATCGTGTCCGACGACTCCACTTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGAC 131856 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 131857 AAAGATCTGCAT 131868 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| || || || ||||| || || ||||| | || || | |||||||||| Sbjct 130936 GTGCTCTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCATCCTCCAACTGCTTGCCG 130995 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| || | |||||||| |||| ||| | | |||||| ||| ||||||| |||| Sbjct 130996 GCGAAAATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTTATCCTGGATCTTCGCCTTG 131055 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||| ||| || || || | ||| ||||| || || || || || Sbjct 131056 ACATTGTCAATCGTGTCCGACGACTCGACTTCGAGCGTAATGGTCTTCCCGGTAAGGGTC 131115 Query 46577 TTAACAAAGATTTGCAT 46593 || ||||| |||||||| Sbjct 131116 TTGACAAAAATTTGCAT 131132 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || |||||||| | || || |||||||| ||||| || Sbjct 131169 CTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTCTAGCTGCTTTCCGGCAAA 131228 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || |||||| ||| |||||| ||| | ||| Sbjct 131229 GATCAAACGCTGCTGGTCCGGGGGTATGCCCTCCTTATCCTGAATCTTCGCCTTCA-CGT 131287 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| ||||| || |||| |||||| || || || || || || || | Sbjct 131288 TGTCAATTGTGTCCGAAGATTCAACCTCCAACGTGATCGTCTTTCCGGTGAGTGTCTTGA 131347 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 131348 CGAAGATCTGCAT 131360 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || || || || |||| |||||||||||||||||||| Sbjct 131905 CTCCTTCTGAATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 131964 Query 46462 TATCAAGCGCTGCTGGTCGG 46481 |||| |||||||||||||| Sbjct 131965 GATCAGGCGCTGCTGGTCGG 131984 >seq1041 Length=164984 Score = 123 bits (136), Expect = 3e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| ||||| |||||||| | || || |||||||| || ||||| Sbjct 54998 TCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAAGCTGCTTCCCCGCGAAG 55057 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||||| || | || |||||||||| |||||| ||||| | Sbjct 55058 ATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTA 55117 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| || || || || | |||||||| |||||||| || || || || Sbjct 55118 TCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTCACG 55177 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 55178 AAGATCTGCAT 55188 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||| |||||||| ||||| || | || || ||||||||||| ||||| Sbjct 54489 CTCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCTCCAGCTGCTTGCCCGCGAA 54548 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||||| ||| | | |||||||||| |||||| ||||| | Sbjct 54549 AATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGAATCTTCGCCTTGACATT 54608 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || || | |||||| || || || || || || || || Sbjct 54609 GTCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTCCCAGTGAGGGTCTTGAC 54668 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 54669 GAAAATCTGCAT 54680 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| || ||||||||||| ||||| Sbjct 54717 CTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAA 54776 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||| ||||| || | || | || |||||||||| ||||||| ||| | | Sbjct 54777 GATGAGGCGTTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 54836 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || || | ||||||||| ||||| ||||| || || || Sbjct 54837 GTCGATGGTGTCAGAGGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAGAGTCTTGAC 54896 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 54897 GAAGATCTGCAT 54908 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || |||||||| |||| |||||||||||||| ||||| Sbjct 55225 CTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 55284 Query 46462 TATCAAGCGCTGCTGGTCGG 46481 ||||||||||||||||||| Sbjct 55285 GATCAAGCGCTGCTGGTCGG 55304 >seq576 Length=23070 Score = 120 bits (132), Expect = 3e-22 Identities = 144/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || || || |||| ||||||||||| || || || Sbjct 15026 CTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCGTCCTCGAGCTGCTTTCCCGCAAA 14967 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAG--C 46519 ||||| || | ||||||| | || | | ||||||| || ||||||| |||| | Sbjct 14966 TATCAGGCACCGCTGGTCAGGAGGGATACCCTCCTTGGCCTGGATCTTCGCTTTGATATC 14907 Query 46520 GTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 ||| | ||||||| ||| || || || | | ||| ||| ||||| |||| || ||| Sbjct 14906 ATCG--ATCGTGTCGGACGACTCGACCTCGAGCATGACGGTCTTGCCGGTCAAGGTCTTA 14849 Query 46580 ACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 14848 ACAAAGATCTGCAT 14835 Score = 109 bits (120), Expect = 6e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 46401 TCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGA 46460 ||||||| ||| ||||||| || || |||||| |||| |||||||||||||| | || Sbjct 15308 TCTCCTTCCGGACGTTGTAGTTAGAGAGCGTGCGCCCGTCCTCGAGCTGCTTGCCCGTGA 15249 Query 46461 ATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG 46520 | || | |||||||| |||| || | || |||||||||| ||||| ||| | || Sbjct 15248 AGATGATACGCTGCTGATCGGGAGGGATGCACTCCTTGTCCTGAATCTTGGCCTTCA-CG 15190 Query 46521 TCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | | | |||||| || || || |||| ||| || || ||| |||||| ||| | | Sbjct 15189 TTGTCAATCGTGTCCGAGGACTCGACTTCCAACGTAATCGTCTTGTCCGTCAACGTCTGA 15130 Query 46580 ACAAAGATTTGCAT 46593 || |||| ||||| Sbjct 15129 ACGAAGACCTGCAT 15116 >seq428 Length=363050 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| |||| |||||||||||||||||||| Sbjct 255469 CTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 255410 Query 46462 TATCAAGCGCTGCTGGTCGG 46481 |||| |||||||||||||| Sbjct 255409 GATCAGGCGCTGCTGGTCGG 255390 >seq406 Length=388386 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||||| || |||||| || || ||||| ||||| | ||||| | Sbjct 234852 ACGGAGCACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCGGAGACCGTGCGACC 234793 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCA 46487 ||| ||||||||||| | |||||| |||| |||||||||| ||| |||| Sbjct 234792 GTCCTCGAGCTGCTTACTGGCGAAGATCAGGCGCTGCTGGCCGGAAGGCA 234743 >seq855 Length=205711 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| | || || ||||||||||||||||| Sbjct 132379 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 132438 Query 46462 TATCAAGCGCTGCTGGTC 46479 |||| |||||||||||| Sbjct 132439 GATCAGGCGCTGCTGGTC 132456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565229384447520