Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq993 306 4e-78 seq606 134 1e-26 seq1041 132 5e-26 seq495 107 2e-18 seq428 86.0 6e-12 seq406 82.4 8e-11 >seq993 Length=568693 Score = 306 bits (338), Expect = 4e-78 Identities = 403/555 (73%), Gaps = 9/555 (2%) Strand=Plus/Minus Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 ||||||||| |||||| ||||| |||||| || | ||| ||||||||||| || || Sbjct 489540 CAAGCAAGCGAAGTCGGTATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGT 489481 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 | |||||||||||| || || || |||||||| || || | |||||| ||| || || Sbjct 489480 GAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAA 489421 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCT 133070 ||||| ||||||||||| || ||||| || |||||||| | |||| || | ||| Sbjct 489420 GAAGATACCCTCGACGGCTGCAAAAGCAACGAGGCGCTCCGCAAACGCGGAGTTCTTGTC 489361 Query 133071 GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGC 133130 | |||||||| || ||||| |||||||| | || | ||| || || || || ||||| Sbjct 489360 CGAAATCCAGCGGAGAGCCCAATCGGCCTTCTTCTTAATGCAGGGGATAGTGTCAATGGC 489301 Query 133131 GTTCAACAAACGGAGTTT-CTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGA 133187 || |||| || | | | || | | || | | |||||||||||||||| || Sbjct 489300 GTCGAACA---GGTGCTCGCGCTGCTGGGGGTCCTTGATGTAGGTGTCGATGAGGAGAGA 489244 Query 133188 ATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTC 133247 ||| | || ||||| | ||||||||| || || || ||||| || || || ||||| Sbjct 489243 GTACGTCTCGGAGTGAATGTTCTCCATCATAATCTGGAAACCGTAGAAACAGCGAGCCTC 489184 Query 133248 GACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCT 133307 || |||| ||||| | | ||| || || || ||||| |||||||| || |||||| Sbjct 489183 CGCCGCCTGAACTTCGTTGGAGAACCGTTCTACGAGATTCTCGTTGACAATACCGTCGGA 489124 Query 133308 GGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG--- 133364 || || || ||||| || ||||| |||||||| ||||||| ||| || | ||| Sbjct 489123 TGCTGCAAAGAAGGCAAGGACGTGGGAAATGAAATGACGCTCGTCGTCATTGAGGCGGTT 489064 Query 133365 CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTC 133424 | |||||| | |||||||| ||||||| |||||| | ||||| || |||||||| Sbjct 489063 GTTCCAGTCATGGAGATCCTTGGAAAGGTCCATCTCCTCTGCCGTCCAGAAGGACGCCTC 489004 Query 133425 GGCTTTTTTGTACAT 133439 ||||| |||||||| Sbjct 489003 TGCTTTCTTGTACAT 488989 Score = 219 bits (242), Expect = 4e-52 Identities = 385/553 (70%), Gaps = 11/553 (2%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| ||||||||| ||||| |||||| || | ||| ||||||||||| || || | Sbjct 487059 GCAGGCAAAGTCGGTATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGTGAG 487118 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 |||||||||||| || || || |||||||| || || | |||||| ||| || ||||| Sbjct 487119 GCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAAGAA 487178 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACG--TGGCTTCTTTGCTG 133071 | ||||||||||| ||||| || || || | ||| | || | | |||| || Sbjct 487179 AATTCCCTCGACGGCTGCGAATGCAACTAGCCTCTC-CGAAAAGACAGAATTCTCGTCT- 487236 Query 133072 GCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCG 133131 || |||||||| | |||||| || ||||| | |||| ||| || || || || || ||| Sbjct 487237 GCTATCCAGCGTAACGCCCAGTCAGCCTTCTTCTTGATGCAAGGTATTGTCTCTATAGCG 487296 Query 133132 TTCAACAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAAT 133189 | | | | | | | | || ||| | | ||| |||||||||||| || | Sbjct 487297 TCGA--AGAGGAAAGTGCGCTCGACAGGGTCCTTGATGTATGTGTCGATGAGGAGGGAGT 487354 Query 133190 ACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGA 133249 || | || || || || || || || ||| || |||||||| ||||| || ||||| Sbjct 487355 ACGTCTCTGAATGCACATTTTCAATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCAG 487414 Query 133250 CCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGG 133309 || |||| || || | | ||| |||||||| ||||| |||||||| |||||||| | Sbjct 487415 CCGCCTGGACCTCATTGGAGAACCGCTCGACGAGATTCTCGTTGACAATGCCGTCCGAAG 487474 Query 133310 CGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTT-GTCGT--TCAAGCGCT 133366 ||||||| ||||| ||||| | || |||||| |||||||| | ||| | || | Sbjct 487475 CGGCGAAGAAGGCAAGCACATATGAGAGGAAATGTCGCTCGTTGGGCGTGAGCTTGCCAT 487534 Query 133367 CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGG 133426 ||| || | || | || ||||| | || || || ||||| || ||||| | | Sbjct 487535 TCCAATCCCAAAGATCATGCGAGAGGTCAATTTCTTCTACTGTCCAGAATGACGCTTGTG 487594 Query 133427 CTTTTTTGTACAT 133439 ||| |||||||| Sbjct 487595 CTTGCTTGTACAT 487607 >seq606 Length=277477 Score = 134 bits (148), Expect = 1e-26 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || || ||||||||||| || ||||| | || |||||| || | Sbjct 253581 ATGCAGATATTCGTCAAGACACTCACGGGCAAGACGATCACGTTGGAAGTCGAGTCCTCG 253640 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||| ||||| || || ||||||| Sbjct 253641 GACACGATCGATAACG-TGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCA 253699 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | ||||||||| ||||| || |||| |||||| ||| |||||||| Sbjct 253700 ACAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGGCGCACGCTCTCTGACTACAA 253759 Query 38423 CATCCAAAAGGAA 38435 ||||| |||||| Sbjct 253760 TATCCAGAAGGAA 253772 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| |||||||| |||| |||||| | || Sbjct 253017 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACGCTCGAGGTCGAGTCGTCC 253076 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| || || | ||||| Sbjct 253077 GACACGATCGATAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCA 253135 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | |||||||| ||||| || || | || || ||| ||| ||||| Sbjct 253136 GCAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGATGGTCGTACGCTCTCCGATTACAA 253195 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 |||||| ||||| ||||||| || Sbjct 253196 CATCCAGAAGGAGTCGACGCTCCA 253219 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | |||||||| || ||||| | || || ||| | | Sbjct 253298 ATGCAGATCTTCGTTAAGACGTTGACGGGCAAGACTATCACTCTTGAAGTGGAGTCTTCG 253357 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| || || ||||| ||||| |||| || Sbjct 253358 GACACGATCGACAACG-TCAAGGCGAAGATCCAGGATAAGGAGGGCATTCCGCCCGATCA 253416 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| ||| ||||| || || || |||| || ||||| ||||||||| Sbjct 253417 GCAGCGCTTGATTTTCGCCGGCAAGCAACTCGAAGACGGTCGTACCCTTTCCGACTACAA 253476 Query 38423 CATCCAAAAGGA-AGCGACGCTGCA 38446 ||| || ||||| ||| ||||| || Sbjct 253477 CATTCAGAAGGAGAGC-ACGCTCCA 253500 >seq1041 Length=164984 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| |||||||| |||| |||||| || | Sbjct 54908 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACGCTCGAGGTCGAGTCCTCT 54849 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| |||||| | || || Sbjct 54848 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 54789 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | ||||||||| |||||||| |||| ||||| || ||||||||| Sbjct 54788 CAACGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCTGACTACAAC 54729 Query 38424 ATCCAAAAGGAAGCGACGCTGCA 38446 ||||| ||||| | |||||||| Sbjct 54728 ATCCAGAAGGAGTCAACGCTGCA 54706 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| |||||||| | || |||||| | || Sbjct 55188 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGTCTTCC 55129 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||| |||| ||||| ||||| ||||| ||||||| Sbjct 55128 GACACCATTGATAACG-TCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCA 55070 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | |||||| || ||||| || || | ||||| || ||| ||||| Sbjct 55069 GCAGCGTCTTATCTTCGCGGGGAAGCAGCTTGAGGATGGTCGCACTCTTTCCGATTACAA 55010 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 |||||| |||||| | || || || Sbjct 55009 CATCCAGAAGGAATCCACTCTCCA 54986 >seq495 Length=337734 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||||||||| || |||||| |||| || ||| | | Sbjct 131868 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAAGTGGAGTCGTCG 131809 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | || | || |||| ||||| ||||| || || ||||||| Sbjct 131808 GACACGATTGACAATG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 131750 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| || || || ||||||||| Sbjct 131749 GCAGCGCCTAATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACTCTTTCCGACTACAA 131690 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| | || || || | || || ||| || | ||||| Sbjct 131689 TATTCAGAAGGAGTCTACCCTTCACCTTGTCCTTCGTCTGCGCGGCGG 131642 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | || ||||| ||||| ||| | || |||||| | || Sbjct 131640 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTTGAGGTCGAGTCTTCC 131581 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | ||||||| ||||| || || |||||| | || || Sbjct 131580 GACACGATCGATAACG-TCAAGGCCAAAATCCAGGACAAGGAAGGTATTCCCCCGGATCA 131522 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || |||| ||| || | |||||||| Sbjct 131521 GCAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGGCGTACGTTGTCGGACTACAA 131462 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 131461 CATCCAGAAGGA 131450 >seq428 Length=363050 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 38349 ATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408 || ||| ||||||| ||||| || || | ||| ||||| ||||| || |||| ||||| Sbjct 255383 ATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACG 255442 Query 38409 CTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||| ||||||||||||||| ||||| | || || || | ||||| || Sbjct 255443 CTCAGCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCG 255492 >seq406 Length=388386 Score = 82.4 bits (90), Expect = 8e-11 Identities = 158/230 (69%), Gaps = 15/230 (7%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||| | ||| | | | |||| || ||||| | Sbjct 234624 ATGCAGATCTTCGTCAAGACACTCACCGGCCAGACCGTTATCCTCGAGGTGGAGGCTTCT 234683 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAA--AGAGGGAA----TTCCCG- 38355 |||| | | | |||| | || | || |||| ||||| ||||| | || ||| Sbjct 234684 GACACCATCGACAACG-TGAAGGCCAAGATCCAGGACAAGGAGAGGTGAGTGGTTACCGT 234742 Query 38356 ------CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||| ||| ||||| || || | ||| | || ||||| || |||| ||||| Sbjct 234743 TGCCTTCCGGCCAGCAGCGCCTGATCTTCGCCAGTAAGCAGCTCGAGGACGGTCGCACGG 234802 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||| |||||||| || ||||| ||||||||||| | ||||| ||| Sbjct 234803 TCTCCGATTACAACATTCAGAAGGAGTCGACGCTGCATCTCGTGCTCCGT 234852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500164822243840