Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq443 244 1e-59 seq550 226 4e-54 seq639 122 1e-22 seq417 86.0 8e-12 >seq443 Length=71244 Score = 244 bits (270), Expect = 1e-59 Identities = 267/355 (75%), Gaps = 0/355 (0%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||||||||| || || || ||||| || ||||| || ||||||||| Sbjct 64139 TCAAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGCCTTGACCTCGAAGATACCT 64080 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | || | ||| ||||| || || || || || || || || ||||| ||| Sbjct 64079 TCCTCGATGGTCAAAAGCGAGACATCGAAGGTTCCTCCGCCGAGATCGAAGATGAGAACG 64020 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | | | ||||| ||||||||||| |||||||| || || || || || Sbjct 64019 TTGCGCTCGCCCACCGTCTTCTTGTCGAGACCGTAGGCGATAGCGGCAGCGGTAGGCTCG 63960 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| |||||||| || || ||||||| || ||||| || ||| Sbjct 63959 TTGATGATACGGAGGACGTTGAGGCCAGCGATGGTACCCGCATCCTTGGTCGCCTGACGT 63900 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 ||||||||||| |||||||| ||||| || ||||| ||| ||||| | |||||| Sbjct 63899 TGCGAATCGTTGAAGTAGGCGGGGACGGTGACGACAGCGCTGGTGACAGTACCACCGAGG 63840 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 ||||| || |||| || ||||| ||| ||||||||| || || ||||| |||| Sbjct 63839 TACGACTCAGCGACCTCCTTCATCTTGACAAGAACCATAGAGGAGATCTCCTCAG 63785 Score = 154 bits (170), Expect = 2e-32 Identities = 275/398 (69%), Gaps = 4/398 (1%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 |||||||| | |||||| || ||||| | || || || ||||| ||||| |||||||| Sbjct 64639 TCACCCGTGAGGATGGCCGCCTGGACAGCAGCACCATACGCGACAGCCTCGTCGGGGTTG 64580 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACAT--TTGTTGAATTTTCG 7127 |||| || || | || || ||||| || | || || |||| ||| || | | Sbjct 64579 ATCGACTTGTTAGGCTCCTTGCCGTTGAAGAAGTCGGA-AACAAGCTTGACGACACGT-G 64522 Query 7128 GGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTG 7187 |||| || || || || || || | |||||| || | || | || || |||| ||| | Sbjct 64521 GGATACGAGTGGAACCGCCAACGAGAACGATCTCGTGAACCTGGGACTTGTCGACCTTCG 64462 Query 7188 AGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTT 7247 || || || || || || || || | | | ||||| | ||| || || | Sbjct 64461 CATCGCGGAGGACCTTCTCAACCGGCTCGAGAGTGCTGCGGAAGAGATCCTGGCAAAGCT 64402 Query 7248 CCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAA 7307 |||| || ||||||||||||| ||| || |||||||| | || ||| | | || || | Sbjct 64401 CCTCGAAGCGTGCACGGGTAAGGGAGGTGTAGAAATCGATACCCTCGAAGAGGGAGTCGA 64342 Query 7308 TTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTC 7367 |||| || || || || || | ||| || | || ||||| || ||||| || ||||| | Sbjct 64341 TTTCGATAGTAGTCTGGGCAGCCGACGAAAGGGTGCGCTTAGCACGCTCGCAAGCCGTGC 64282 Query 7368 GTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 | | |||||| |||||||| ||||| || || | |||| Sbjct 64281 GGAGACGACGGAGGGCACGAGGGTTGCCAGAGAGATCT 64244 >seq550 Length=291850 Score = 226 bits (250), Expect = 4e-54 Identities = 263/355 (74%), Gaps = 0/355 (0%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || ||||| |||||||||||||| || || || ||||| || ||||| || || || ||| Sbjct 1316 TCAAAATCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGCCTTGACCTCGAAAATGCCT 1257 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | || | ||| ||||| || || || || || || || || |||| ||| Sbjct 1256 TCCTCAATGGTCAAAAGCGAGACATCGAAGGTTCCTCCGCCAAGATCGAAGTTGAGAACG 1197 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | | | ||||| ||||||||||| |||||||| || || | || ||| Sbjct 1196 TTGCGCTCGCCCACCGTCTTCTTGTCGAGACCGTAGGCGATAGCGGCGGCGGGGGGCTCA 1137 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| |||||||| | || ||||||| || ||||| || ||| Sbjct 1136 TTGATGATACGGAGGACGTTGAGGCCAGCGACGGTACCCGCATCCTTGGTCGCCTGACGT 1077 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 ||||||||||| |||||||| ||||| || ||||| ||| ||||| | |||||| Sbjct 1076 TGCGAATCGTTGAAGTAGGCGGGGACAGTGACGACGGCGCTGGTGACAGTACCACCGAGG 1017 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 ||||| || |||| || ||||| ||| || ||||| || || ||||| |||| Sbjct 1016 TACGACTCGGCGACCTCCTTCATCTTGAGGAGGACCATGGAGGAGATCTCCTCAG 962 >seq639 Length=254689 Score = 122 bits (134), Expect = 1e-22 Identities = 189/269 (70%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | ||| || || || ||||| || ||||| | |||| ||| Sbjct 141296 TCGAAGTCCTCACCACCAAGGTGAGTGTCACCGGCGGTGGCCTTGACGGCGAAGACACCA 141237 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||||| | | || ||||| ||||| |||||||| || || || ||||| ||| Sbjct 141236 CCAGTGATGTTGAGAAGAGAGACATCGAACGTTCCACCACCAAGATCGAAGATGAGGACG 141177 Query 7577 TTCGTATCGTCGTCTTTGTTCTTA---TCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 ||| | || || | || | ||||||||||| ||||| || || || || || Sbjct 141176 TTCTTCTCTGCGC---TCGACTGACGGTCGAGACCGTAGGCGATGGCAGCGGCGGTGGGC 141120 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || || ||||| ||| | || ||||| || | ||||||| || ||||| | Sbjct 141119 TCGTTGATGATACGGAGAACCTCAAGACCAGCGATGGCGCCCGCATCCTTGGTCGCCAGA 141060 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 || || || ||||| |||||||| || || Sbjct 141059 CGCTGAGAGTCGTTGAAGTAGGCAGGAAC 141031 >seq417 Length=374089 Score = 86.0 bits (94), Expect = 8e-12 Identities = 204/306 (67%), Gaps = 2/306 (1%) Strand=Plus/Plus Query 22444 TTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAACTCCACAAAATGAA 22503 || || ||||| || || || ||||| ||||| || || || || || || | || Sbjct 349526 TTCTACCAGGCCTCGACGTCCGAGCTGTACGGCAAGGTCGTCGAGACGCCGCAGACGGAG 349585 Query 22504 AATACACCGTTTTACCCGCGTTCACCATATGGGGTAGCTAAATTGATGGGATATTGGG-C 22562 || || ||||| |||||||| || || ||||| || || || || || || ||| | Sbjct 349586 AAAACGCCGTTCTACCCGCGCTCGCCGTATGGCGTTGCGAAGCTGTACGGGTACTGGATC 349645 Query 22563 GACAGTTAATTATAGAGAATCATACGGTATGTTTGCATGCAATGGTATAATGTTCAACCA 22622 | | || || || || || | |||||||||| || ||||| || || |||||||||| Sbjct 349646 GTC-GTGAACTACAGGGAGGCGTACGGTATGTACGCGTGCAACGGCATCCTGTTCAACCA 349704 Query 22623 CGAATCACCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAACACTCGGTGTCGCTAA 22682 ||| || | || || | ||||| || || || || | | || ||||| | Sbjct 349705 CGAGAGCCCCCGTCGCGGGCGTACGTTCGTCACCCGCAAGATCTCGCGCGCGGTCGCGGA 349764 Query 22683 TATCAGTGCAGGTAAACAAAAATGTTTATACCTTGGTAACCTAGATGCGAAACGAGATTG 22742 |||| || || || || || | ||||| || || | || ||||| || ||||| Sbjct 349765 TATCCACCTTGGAAAGCAGAAGTGCCTCTACCTCGGCAATGTTGACGCGAAGCGTGATTG 349824 Query 22743 GGGTCA 22748 ||| || Sbjct 349825 GGGACA 349830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635122669631840