Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1041 165 2e-35 seq495 156 9e-33 seq606 136 9e-27 seq576 105 1e-17 seq406 87.8 4e-12 seq823 84.2 5e-11 >seq1041 Length=164984 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 ||||| |||||||| || || || || |||||||||| |||||| | ||||| || ||| Sbjct 54983 AGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAAGC 55042 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||||| || ||||||||||| || || ||||| ||||||||||| || ||||| || || Sbjct 55043 TGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATC 55102 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 ||| ||||||||| ||||||||||| ||| || || ||||| || | ||||| || Sbjct 55103 TTTGCCTTGACGTTATCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCC 55162 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || ||||| | ||||| Sbjct 55163 GTGAGGGTCTTCACGAAGATCTGCAT 55188 Score = 145 bits (160), Expect = 2e-29 Identities = 157/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 ||||||||||||| ||||| || || ||||| || |||| ||||| | ||||| || | Sbjct 54473 CAAGGTGAAGAGTAGACTCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCTCCA 54532 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 ||||||| || ||||| ||||| || || ||||| || ||||| || || ||||| |||| Sbjct 54533 GCTGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGAA 54592 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | || |||||| || ||||| ||||||||| || || || || || | |||||| | Sbjct 54593 TCTTCGCCTTGACATTGTCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTCC 54652 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || | || || ||||| | ||||| Sbjct 54653 CAGTGAGGGTCTTGACGAAAATCTGCAT 54680 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||||||||| || ||||| ||||| || | |||||| | || || ||| Sbjct 55208 ACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCG 55267 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||||||| || |||||||| | || || ||||| ||||| |||| Sbjct 55268 AGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGC 55313 >seq495 Length=337734 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || ||||| || ||||||||||| |||| |||||| | || || ||| Sbjct 131660 ACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCCTCG 131719 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 131720 AGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 131779 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || ||||| |||||||| |||||||| ||||| | |||||| Sbjct 131780 ATCTTGGCCTTGACATTGTCAATCGTGTCCGACGACTCCACTTCGAGGGTGATCGTCTTG 131839 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 131840 CCCGTGAGGGTCTTGACAAAGATCTGCAT 131868 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||||||||||||||| || || || |||||||| | |||||| | ||||| || Sbjct 131151 AACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTC 131210 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| | || || ||||| || || ||||| || || || || Sbjct 131211 TAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCCGGGGGTATGCCCTCCTTATCCTG 131270 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| ||||| ||||| ||||||||| ||| || || | || | |||||| Sbjct 131271 AATCTTCGCCTTCACGTTGTCAATTGTGTCCGAAGATTCAACCTCCAACGTGATCGTCTT 131330 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || | || || ||||| | ||||| Sbjct 131331 TCCGGTGAGTGTCTTGACGAAGATCTGCAT 131360 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 |||||||| || ||||| || || || ||||| || | | || | ||| || || ||| Sbjct 131435 AGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTACGCCCGTCCTCAAGC 131494 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 |||||||| || |||||||| || || || || || ||||| ||||| ||||| || ||| Sbjct 131495 TGCTTACCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCTTCCTTGTCCTGGATT 131554 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || ||||||||| || || ||||| ||| || || |||||||||| ||||| || Sbjct 131555 TTGGCCTTGACGTTATCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATGGTCTTGCCG 131614 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || ||||| | ||||| Sbjct 131615 GTCAACGTCTTCACGAAGATCTGCAT 131640 >seq606 Length=277477 Score = 136 bits (150), Expect = 9e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 ||||||| || ||| ||| || ||||| ||||| |||| ||| || | || ||||||| Sbjct 253505 CAAGGTGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCGA 253446 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 | ||||| || ||||| || | || || || || || |||||||| || || || || | Sbjct 253445 GTTGCTTGCCGGCGAAAATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTTATCCTGGA 253386 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | || ||||||||| || || ||||||||| ||||||||||| || | ||||| | Sbjct 253385 TCTTCGCCTTGACGTTGTCGATCGTGTCCGAAGACTCCACTTCAAGAGTGATAGTCTTGC 253326 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || ||||| | ||||| Sbjct 253325 CCGTCAACGTCTTAACGAAGATCTGCAT 253298 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || ||| || || || |||||||| || | || || | ||| || ||| Sbjct 253789 ACAAGGTGGAGGGTGCTTTCCTTCTGGATATTGTAGTCAGAGAGCGTGCGCCCGTCCTCG 253730 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || |||||||| ||||| ||||| || ||||| ||| Sbjct 253729 AGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGA 253670 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || || |||||||| || ||||| | || | |||||| Sbjct 253669 ATCTTGGCCTTCACGTTATCGATCGTGTCCGAGGACTCGACTTCCAACGTGATCGTCTTG 253610 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 253609 CCCGTGAGTGTCTTGACGAATATCTGCAT 253581 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 ||||| || || ||||| || || || |||||||||| || || | ||||| |||||| Sbjct 253222 AGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGC 253163 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||||| || || ||||| || || || ||||| ||||| || || || ||||| || || Sbjct 253162 TGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATC 253103 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || ||||||||| || || ||||| || || || || || || | ||||| || Sbjct 253102 TTCGCCTTGACGTTATCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCA 253043 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || || | ||||| Sbjct 253042 GTCAAGGTCTTGACAAAGATCTGCAT 253017 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 ||||| ||||||||||| || || || ||||| || | || || | ||| || |||||| Sbjct 252932 AGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTGCGCCCGTCCTCGAGC 252873 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAAT 195035 ||||| || ||||||||||| || || ||||| ||||| || Sbjct 252872 TGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCCGGAGGGAT 252832 >seq576 Length=23070 Score = 105 bits (116), Expect = 1e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 ||||||| || ||| ||| || | | ||||| | | || || | ||| || |||| Sbjct 15323 CAAGGTGGAGGATGGTCTCCTTCCGGACGTTGTAGTTAGAGAGCGTGCGCCCGTCCTCGA 15264 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 ||||||| || | |||||| | || || || || ||||| |||| || ||||| |||| Sbjct 15263 GCTGCTTGCCCGTGAAGATGATACGCTGCTGATCGGGAGGGATGCACTCCTTGTCCTGAA 15204 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | || ||| ||||| ||||| |||||||| || ||||| | |||| |||||| Sbjct 15203 TCTTGGCCTTCACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAACGTAATCGTCTTGT 15144 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || | ||||| || ||||| Sbjct 15143 CCGTCAACGTCTGAACGAAGACCTGCAT 15116 >seq406 Length=388386 Score = 87.8 bits (96), Expect = 4e-12 Identities = 153/222 (69%), Gaps = 13/222 (6%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || ||||| || ||||| |||||||||| | || | || || ||| Sbjct 234845 ACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCGGAGACCGTGCGACCGTCCTCG 234786 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGG-AATG-----------CCT 195039 |||||||||| |||||||| || || || ||| | | ||| || | ||| Sbjct 234785 AGCTGCTTACTGGCGAAGATCAGGCGCTGCTGGCCGGAAGGCAACGGTAACCACTCACCT 234726 Query 195040 -TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || ||| ||||| || |||||||| ||| ||||| || || Sbjct 234725 CTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAAGCCTCCACCTCGAG 234666 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||| |||| || || | || || ||||| | ||||| Sbjct 234665 GATAACGGTCTGGCCGGTGAGTGTCTTGACGAAGATCTGCAT 234624 >seq823 Length=214425 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || ||||| |||||||||| | | | || || ||| Sbjct 1281 ACGAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCGGAGATCGCGCGACCGTCCTCG 1340 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||||||||| ||||||||| || ||| | ||||| ||||| |||| Sbjct 1341 AGCTGCTTACTTGCGAAGATCAGGCGTCGCTGGTCGGGAGGGATGC 1386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109463461362692