Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq495 109 4e-19 seq1041 95.1 8e-15 seq606 89.7 3e-13 >seq495 Length=337734 Score = 109 bits (120), Expect = 4e-19 Identities = 151/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 34773 ACCAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | ||||| || ||||||||||||||||| |||||| | || |||| || Sbjct 130923 ACCAAGGTGGAGCGTGCTCTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCATCCTC 130982 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||| || ||||| || || || || ||||| || |||| | ||||||||| || Sbjct 130983 CAACTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTTATCCTG 131042 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| ||||| | |||| || | ||| || |||| || ||||| || Sbjct 131043 GATCTTCGCCTTGACATTGTCAATCGTGTCCGACGACTCGACTTCGAGCGTAATGGTCTT 131102 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| ||||| || ||||| Sbjct 131103 CCCGGTAAGGGTCTTGACAAAAATTTGCAT 131132 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||| || ||||| ||||| | || | || || ||||| || ||||| || Sbjct 131678 TCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAG 131737 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||| || |||||||| |||| | ||||||||||| ||||| ||||| Sbjct 131738 ATTAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 131797 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || |||| ||| || || || |||||||| ||||| ||| Sbjct 131798 TCAATCGTGTCCGACGACTCCACTTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACA 131857 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 131858 AAGATCTGCAT 131868 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| ||| || ||||| ||||| || |||||||| | || |||| || Sbjct 131151 AACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTC 131210 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| ||||||||||| || | || |||||||| | || | |||||||| || Sbjct 131211 TAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCCGGGGGTATGCCCTCCTTATCCTG 131270 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||||| || ||| | || | || | ||||| || | || || || || Sbjct 131271 AATCTTCGCCTTCACGTTGTCAATTGTGTCCGAAGATTCAACCTCCAACGTGATCGTCTT 131330 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| ||||| ||||| || ||||||||||| Sbjct 131331 TCCGGTGAGTGTCTTGACGAAGATCTGCAT 131360 >seq1041 Length=164984 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || |||||||| || || | || |||| |||||||| || || || || Sbjct 54490 TCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCTCCAGCTGCTTGCCCGCGAAA 54549 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||||| ||||| Sbjct 54550 ATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTG 54609 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || |||| || || || || || ||||| ||||| || Sbjct 54610 TCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTCCCAGTGAGGGTCTTGACG 54669 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 54670 AAAATCTGCATA 54681 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || | || |||||||| || || || || Sbjct 54718 TCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAG 54777 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || |||||||| || | || | ||||||||||| |||||| || || || Sbjct 54778 ATGAGGCGTTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCAC--AT 54835 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| || ||| || |||| || ||||| || || || |||||||| Sbjct 54836 --TGTCGATGGTGTCAGAGGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAGAGTCTT 54893 Query 34967 CACAAAGATCTGCATA 34982 || |||||||||||| Sbjct 54894 GACGAAGATCTGCATA 54909 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| || || ||||| | || |||| || ||||| || || || || Sbjct 54997 TTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAAGCTGCTTCCCCGCGAA 55056 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | ||||||||||| ||||| |||||| Sbjct 55057 GATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTT 55116 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | ||| || || | || ||||| || |||||||| |||||||| Sbjct 55117 ATCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTCAC 55176 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 55177 GAAGATCTGCAT 55188 >seq606 Length=277477 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || || || | || |||| || ||||| || || ||||| Sbjct 253207 TCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGCTGCTTGCCCGCAAAG 253148 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| |||||| Sbjct 253147 ATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTA 253088 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || |||| || ||||| || || || | ||||| ||| Sbjct 253087 TCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAAGGTCTTGACA 253028 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 253027 AAGATCTGCATA 253016 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 34773 ACCAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | ||||| || ||||||||||| ||||| |||||| | || | || || Sbjct 253507 ACCAAGGTGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTC 253448 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || ||||| || || | || ||||| || |||| | |||||||| || Sbjct 253447 GAGTTGCTTGCCGGCGAAAATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTTATCCTG 253388 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| |||||| | |||| || | ||| || || | || || || || Sbjct 253387 GATCTTCGCCTTGACGTTGTCGATCGTGTCCGAAGACTCCACTTCAAGAGTGATAGTCTT 253328 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | ||||| || ||||||||||| Sbjct 253327 GCCCGTCAACGTCTTAACGAAGATCTGCAT 253298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324628551541728