Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq993 105 8e-18 >seq993 Length=568693 Score = 105 bits (116), Expect = 8e-18 Identities = 339/519 (65%), Gaps = 9/519 (2%) Strand=Plus/Plus Query 19002 TTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGC 19061 ||| || ||||| || | || ||||| || || | || || | |||||| ||||| || Sbjct 487101 TTCGTTCGAAAACGTGAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGC 487160 Query 19062 AAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATA 19121 || || || || ||||| || || || || ||||| || |||||||| || |||| | Sbjct 487161 GAAGGAGCCGGAGAAGAAAATTCCCTCGACGGCTGCGAATGCAACTAGCCT--CTCCGAA 487218 Query 19122 ACTAGCATCATTAT--TATGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACA 19178 | | || ||| | | || ||||| | ||||| ||||||||||| || | || Sbjct 487219 AAGA-CAGAATTCTCGTCTGCTATCCAGCGTAACGCCCAGTCAGCCTTCTTCTTGATGCA 487277 Query 19179 TGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGC 19238 || ||||||||||||| | || || | | ||||| | | || || | |||| Sbjct 487278 AGGTATTGTCTCTATAGCGTCGAAGAGGAAAGTGCGCTCGACAGGGTCCTTGATGTATGT 487337 Query 19239 ATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTA 19298 || || | | |||| | |||||||| | |||||| || ||||| || ||||| Sbjct 487338 GTCGATGAGGAGGGAGTACGTCTCTGAATGCACATTTTCAATCATGATCTGGAAGCCGTA 487397 Query 19299 AAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATT 19358 || || | || || | ||| || ||| | | || | ||||| | ||| || || Sbjct 487398 GAAGCAGCGGGCCTCAGCCGCCTGGACCTCATTGGAGAACCGCTCGACGAGATTCTCGTT 487457 Query 19359 AACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATC 19418 || || || || ||| || || || || | |||| | | |||||| || | Sbjct 487458 GACAATGCCGTCCGAAGCGGCGAAGAAGGCAAGCACATATGAGAGGAAATGTCGCTCGTT 487517 Query 19419 TGAGGTTA--ATG-TATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGT 19475 | || | || ||||||||| || ||| | || | || | |||||| ||||| Sbjct 487518 GGGCGTGAGCTTGCCATTCCAATCCCAAAGATCATGCGAGAGGTCAATTTCTTCTACTGT 487577 Query 19476 CCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514 ||| || || || | ||||| || ||||| | ||| || Sbjct 487578 CCAGAATGACGCTTGTGCTTGCTTGTACATCTGCCAGAT 487616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562099834364640