Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq993 293 4e-74 seq506 145 1e-29 >seq993 Length=568693 Score = 293 bits (324), Expect = 4e-74 Identities = 401/557 (72%), Gaps = 5/557 (1%) Strand=Plus/Plus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||| | |||||||||||| | |||| ||| || || ||| |||||| |||| || | Sbjct 487052 AGAGTAGGCAGGCAAAGTCGGTATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCGAAA 487111 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 | ||| || ||||||| || | || ||||||||||| || | ||||| ||||| | Sbjct 487112 ACGTGAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGCCGG 487171 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGA-AGCGTTC 48301 ||||||| || ||||| || || ||||| || |||||||| | ||||| || ||| Sbjct 487172 AGAAGAAAATTCCCTCGACGGCTGCGAATGCAACTAGCCTCTC-CGAAAAGACAGAATTC 487230 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 | ||||| |||||| | ||||||||| ||||||||||||||||| || || |||||| Sbjct 487231 TCGTCTGCTATCCAGCGTAACGCCCAGTCAGCCTTCTTCTTGATGCAAGGTATTGTCTCT 487290 Query 48362 ATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTT 48421 || || |||||| ||| ||| | | |||| | || || || || Sbjct 487291 ATAGCGTCGAAGAGGAAAGTGCGCTCGACAGGGTCCTTGATGTATGTGTCGATGAGGAGG 487350 Query 48422 GCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481 | |||| |||| || |||||||| || || ||||||||| ||||||||| | |||| Sbjct 487351 GAGTACGTCTCTGAATGCACATTTTCAATCATGATCTGGAAGCCGTAGAAGCAGCGGGCC 487410 Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCT 48541 ||| | |||| || || ||||||| | ||| | |||||||| ||||| || || || Sbjct 487411 TCAGCCGCCTGGACCTCATTGGAGAACCGCTCGACGAGATTCTCGTTGACAATGCCGTCC 487470 Query 48542 GAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---A 48598 ||||| || ||||||||||| |||| | |||||||| ||||||||| | ||||| Sbjct 487471 GAAGCGGCGAAGAAGGCAAGCACATATGAGAGGAAATGTCGCTCGTTGGGCGTGAGCTTG 487530 Query 48599 GCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCG 48658 ||||||| || | || | ||||| | |||||| || |||||||| ||||| Sbjct 487531 CCATTCCAATCCCAAAGATCATGCGAGAGGTCAATTTCTTCTACTGTCCAGAATGACGCT 487590 Query 48659 AGTGCTTTTTTGTACAT 48675 |||||| |||||||| Sbjct 487591 TGTGCTTGCTTGTACAT 487607 Score = 251 bits (278), Expect = 1e-61 Identities = 391/557 (70%), Gaps = 5/557 (1%) Strand=Plus/Minus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||||| ||| || ||||| | |||| ||| || || ||| |||||| |||| || | Sbjct 489544 AGAGCAAGCAAGCGAAGTCGGTATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCGAAA 489485 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 | ||| || ||||||| || | || ||||||||||| || | ||||| ||||| | Sbjct 489484 ACGTGAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGCCGG 489425 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||| ||||| || || || || || ||| | ||| | || | | ||||| Sbjct 489424 AGAAGAAGATACCCTCGACGGCTGCAAAAGCAACGAGGCGCTCCGCAAACGCGGAGTTCT 489365 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 |||| || |||||| || ||||| || ||||||||||| ||||| || || || || | Sbjct 489364 TGTCCGAAATCCAGCGGAGAGCCCAATCGGCCTTCTTCTTAATGCAGGGGATAGTGTCAA 489305 Query 48363 TGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTG 48422 |||| ||| || | || || || | |||| | ||||| || || | Sbjct 489304 TGGCGTCGAACAGGTGCTCGCGCTGCTGGGGGTCCTTGATGTAGGTGTCGATGAGGAGAG 489245 Query 48423 CGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCT 48482 |||| |||| ||||| | ||||| || |||||||| |||||||| | |||| Sbjct 489244 AGTACGTCTCGGAGTGAATGTTCTCCATCATAATCTGGAAACCGTAGAAACAGCGAGCCT 489185 Query 48483 CAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTG 48542 | | |||| ||||| ||||||| | || | |||||||| ||||| || || || | Sbjct 489184 CCGCCGCCTGAACTTCGTTGGAGAACCGTTCTACGAGATTCTCGTTGACAATACCGTCGG 489125 Query 48543 AAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC-- 48600 | || ||||||||||||||||| || || |||||| ||||||| || |||| || Sbjct 489124 ATGCTGCAAAGAAGGCAAGGACGTGGGAAATGAAATGACGCTCGTCGTCATTGAG-GCGG 489066 Query 48601 --ATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCG 48658 |||||| | || | || ||| ||||||| || || | |||||||||||||| Sbjct 489065 TTGTTCCAGTCATGGAGATCCTTGGAAAGGTCCATCTCCTCTGCCGTCCAGAAGGACGCC 489006 Query 48659 AGTGCTTTTTTGTACAT 48675 |||||| |||||||| Sbjct 489005 TCTGCTTTCTTGTACAT 488989 >seq506 Length=319592 Score = 145 bits (160), Expect = 1e-29 Identities = 421/639 (66%), Gaps = 23/639 (4%) Strand=Plus/Minus Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||||||||||| || |||||||| ||||||||||| ||| || || ||||| Sbjct 219866 GTGTAGGGCTCGAAGCATTCGTTGTTGCCCAGAATCTGGCTAGTCGACGCAGTAGGCATA 219807 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCC--GAAGCTCTG 213078 ||||||| |||||| |||||||| || | | | | | |||| || ||| | Sbjct 219806 GGAGCCAGCAGGAGCGAGTTCCTCAAACCATATTGGGCAACCTT-CGCCTTGAGACTC-G 219749 Query 213079 CCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGA 213138 |||| ||||| ||||| | | || |||||| || |||| | Sbjct 219748 CCCAATCCCAG---------AGGTCTGTTGGCGTGACACCCCACATATCGTACTGGAGCT 219698 Query 213139 TGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCT 213198 |||| | | | |||||||||||||| | ||| ||||| ||||||||||||| || Sbjct 219697 TGCCCTGCGACGCCGGGCTGCCCTGGTACGTCTCGTACGGGCCCTGCTCCTTGGCCATCT 219638 Query 213199 CGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCT 213258 ||||| ||||| | ||||||| ||||||||| || || |||| | ||| ||||| Sbjct 219637 CGCAGCTCGCCTCGACTGCAGCGTGGTAGATGGTCTCGAAGATCTGCAGGTTCAGCTTAC 219578 Query 213259 TGGCCTCTGGGGACGTGAAGGGCATCATCATGCG-TTGGAACACATCAGCCAGCCCCTGG 213317 ||||| || ||| |||| | || ||| |||| | || || || ||||| Sbjct 219577 GTGCCTCGACCGAGTCGAATGGCAGCCGCA-GCGCCATGAACGCGTCCGCGAGGCCCTGC 219519 Query 213318 ACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAA 213377 || |||||||| || || | ||| | || ||| || || | ||| | ||||| Sbjct 219518 ACACCGATGCCAATCGGACGGTGGCGCATGTTCGAGTTCCGGGCCTCAGGAATCGGGTAG 219459 Query 213378 AAGTT-GCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAG 213436 |||| ||| |||||||| ||| |||||| | | | || || | ||| | | || Sbjct 219458 TAGTTCGCA-TCGATGATGCGGTTCAGGTTGAACGCGACGACCTTTGCGACGTCGTGGAG 219400 Query 213437 GTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGC 213496 || | ||| || | ||| | ||| | ||| ||||| || || || Sbjct 219399 CCTCTGGAAGTTGTAC---TTGCCAC---CCTCGATGAACGACGGCAGCGCAATAGAAGC 219346 Query 213497 CAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTT 213556 |||||||| ||||| ||| | | | | |||||| |||||||| ||||||||||| Sbjct 219345 AAGGTTGCAGACGGCGGTCTCATCGGGTGCGGAGTACTCGATGATCTCCGTGCACAGGTT 219286 Query 213557 GCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTT 213595 | | |||||| || |||||||| ||||| ||||| Sbjct 219285 AGAGGACTTGATGGTACCAAGGTTCTGCTGGTTGGACTT 219247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931517942051840