Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq993 165 2e-35 >seq993 Length=568693 Score = 165 bits (182), Expect = 2e-35 Identities = 436/655 (67%), Gaps = 22/655 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||| | || ||| ||| |||||| | ||||| ||||| || Sbjct 487616 ATCTGGCAGATGTACAAGCAAGCACAAGCGTCATTCTGGACAGTAGAAGAAATTGACCTC 487557 Query 25537 GCCAAGGACAT---GGACGGC--TGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 | | || | ||| | ||| | |||| || || ||||| ||||| ||| Sbjct 487556 TCGCATGATCTTTGGGATTGGAATGGCAAGCTCACGCCCAA--CGAGCGACATTTCCTCT 487499 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 || ||| | || ||||| || || || || || || || ||||||||||| |||| Sbjct 487498 CATATGTGCTTGCCTTCTTCGCCGCTTCGGACGGCATTGTCAACGAGAATCTCGTCGAGC 487439 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | ||| ||| || || ||| | |||||| || |||||||| |||||||| | Sbjct 487438 GGTTCTCCAATGAGGTCCAGGCGGCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGA 487379 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACG 25768 | ||||||||||| || ||| ||| || || || || || ||||| | ||| Sbjct 487378 TTGAAAATGTGCATTCAGAGACGTACTCC---CTCCTCATCGACACATACATCAAGGACC 487322 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | |||| | | || || | || || ||| ||||| ||||||||| ||||| Sbjct 487321 CTGTCGAGCGCACTTTCCTCTTCGACGCTATAGAGACAATACCTTGCATCAAGAAGAAGG 487262 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCC-AGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 | ||||| | ||||| | ||| | ||| || ||| ||| |||| || Sbjct 487261 CTGACTGGGCGTTACGCTGGAT-AGCAGACGAGAATTCTGTCTTTTCGGAGAGGCTAGTT 487203 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 || || || || || ||||| || || ||| ||| || || || | |||||||||||| Sbjct 487202 GCATTCGCAGCCGTCGAGGGAATTTTCTTCTCCGGCTCCTTCGCCTCTATCTTCTGGCTC 487143 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || || ||||||||| || ||||| ||||| |||||| | | || ||| Sbjct 487142 AAGAAGCGTGGTCTCATGCCCGGCCTCACGTTTTCGAACGAACTCATCTCCCGCGATGAG 487083 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCA-CTTGCTCCACAAAC-CTT 26065 || | || | || ||||||||||| |||| | |||| ||| || || | | | | Sbjct 487082 GGCATGCATACCGACTTTGCCTGCCTACTCTTC---CGCCATCTTCGTCGACGACCTCAT 487026 Query 26066 CTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 | ||| || || | | || |||| ||||||||||||||| || |||||||| Sbjct 487025 CCGAAGCGA--GTGGAGAAGATTATCACAGAGGCTGTGGAGATTGAAAAGGAGTT 486973 Score = 149 bits (164), Expect = 1e-30 Identities = 377/569 (66%), Gaps = 11/569 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||| || | || |||||| || || ||||| || || Sbjct 488980 ATCTGGCAAATGTACAAGAAAGCAGAGGCGTCCTTCTGGACGGCAGAGGAGATGGACCTT 489039 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594 ||||||| | | | |||| || | ||| ||||| ||| | | ||| | Sbjct 489040 TCCAAGGATCTCCATGACTGGAACAACCGCCTCAATGACGACGAGCGTCATTTCATTTCC 489099 Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||||||||| || || ||||| || ||||||||||| || | Sbjct 489100 CACGTCCTTGCCTTCTTTGCAGCATCCGACGGTATTGTCAACGAGAATCTCGTAGAACGG 489159 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| ||| ||||| ||| | |||||| |||||||||||||||||||| || Sbjct 489160 TTCTCCAACGAAGTTCAGGCGGCGGAGGCTCGCTGTTTCTACGGTTTCCAGATTATGATG 489219 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTC 25770 || || | ||||| ||| ||| | || || || || ||||| | ||| | Sbjct 489220 GAGAACATTCACTCCGAGACGTACTCT---CTCCTCATCGACACCTACATCAAGGACCCC 489276 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCAC-ATACCCAGCATCAAGAGGAAGGC 25829 || | || | ||||| | ||||| || ||| || ||| |||| |||| |||||| Sbjct 489277 CAGCAGCGCGAGCACCTGTTCGACGCCATTGA-CACTATCCCCTGCATTAAGAAGAAGGC 489335 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||| | ||||| | ||| | | |||||| ||||| || || || Sbjct 489336 CGATTGGGCTCTCCGCTGGATTTCGGACAAGAACTCCGCGTTTGCGGAGCGCCTCGTTGC 489395 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 ||||| || || ||||| ||||| ||| ||| || || || | |||||||||||||| Sbjct 489396 TTTTGCAGCCGTCGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCTATCTTCTGGCTCAA 489455 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || ||||||||| || ||||| ||||| |||||| | | || ||||| Sbjct 489456 GAAGCGTGGTCTCATGCCCGGCCTCACGTTTTCGAACGAACTCATCTCCCGCGATGAGGG 489515 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 | || | || || || ||| |||||| Sbjct 489516 CATGCATACCGACTTCGCTTGCTTGCTCT 489544 Score = 91.5 bits (100), Expect = 3e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 26152 GGCATGAACAACAGAC-TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTG 26210 || |||||| ||||| | ||| |||||||||| |||| ||| ||||||| | |||| Sbjct 486881 GGTATGAACG-CAGACCTTATGTGCCAATACATCGAGTTTGTCGCCGACCGTTTGCTCGT 486823 Query 26211 CCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACAT 26270 | ||| || || | | |||| | || | |||||||||||||| ||||| | || Sbjct 486822 CGCGCTTGGGAACGAAAAGCACTACCGCGCGACGAACCCGTTCGACTTCATGGATATGAT 486763 Query 26271 ATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||| | |||| ||||||||||||||||| ||| Sbjct 486762 CTCGCTTCAAGGCAAGACCAACTTCTTTGAGAAG 486729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928829984925440