Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq150 95.1 4e-14 seq993 91.5 4e-13 >seq150 Length=124156 Score = 95.1 bits (104), Expect = 4e-14 Identities = 120/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 251486 CACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAG 251545 ||||||| || |||||||||||||||||||| || ||||| || |||||||| || || Sbjct 113442 CACCGTGCGAGATCATACAATCACGCTCCATCTCTCCGAACCGCAGACCACCGTCACGGC 113501 Query 251546 CCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTT 251605 | |||||| | ||||| |||||||| | || || || || ||| || Sbjct 113502 TACGACCCTCAACCGGCTGGCGAGTGAGGATTTGCACGGGGCCACGGGCGCGAGAGTGGA 113561 Query 251606 GCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATG-CGGG 251648 ||| || | ||||| |||||||| ||||||||| ||| |||| Sbjct 113562 TCTTGTCGTCGACCATGTGCTTGAGGCGCTGGTAGTATGTCGGG 113605 Score = 87.8 bits (96), Expect = 5e-12 Identities = 110/148 (74%), Gaps = 6/148 (4%) Strand=Plus/Plus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 ||||||||||||| || || || || ||||||||||| |||||||| | | || | Sbjct 113799 CGATAGTCATACGGGACGGGATGGCGTGCGGATTGATGATAATGTCGGGGGTGATGCCTT 113858 Query 251903 CAGCAGTGAAGGGCATATCCTTTTCCT--CAATA-ATGTTTCCAATAGTTCCCTTTTGTC 251959 | ||||| || ||||||||| |||| | || || | || || || ||||| |||| Sbjct 113859 CCGCAGTAAACGGCATATCC---TCCTGGCGGTAGGTGATACCGATGGTCCCCTTCTGTC 113915 Query 251960 CGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||| |||||||| || || Sbjct 113916 CGTGACGAGAAGCAAACTTATCGCCGAT 113943 >seq993 Length=568693 Score = 91.5 bits (100), Expect = 4e-13 Identities = 244/369 (66%), Gaps = 8/369 (2%) Strand=Plus/Plus Query 133292 GAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATC 133351 |||||||| ||| || || || || || || | |||||| |||||| || || Sbjct 489169 GAAGTTCAGGCGGCGGAGGCTCGCTGTTTCTACGGTTTCCAGATTATGATGGAGAACATT 489228 Query 133352 CATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGA---AG 133408 || || || || ||| || || || || |||||||| || || ||| || Sbjct 489229 CACTCCGAGACGTACTCTCTCCTCATCGACACCTACATCAAGGACCCCCAGCAGCGCGAG 489288 Query 133409 CACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCT 133468 ||| || ||| |||||||| | | || || ||||| ||||| | || |||||| Sbjct 489289 CAC---CTGTTCGACGCCATTGACACTATCCCCTGCATTAAGAAGAAGGCCGATTGGGCT 489345 Query 133469 ATTAAATGGATCCAGGACAAGCG-TGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGT 133527 | ||||| ||||||| | || |||| || || |||||||||||||| | Sbjct 489346 CTCCGCTGGATTTCGGACAAGAACTCCGCGTTT-GCGGAGCGCCTCGTTGCTTTTGCAGC 489404 Query 133528 AGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGG 133587 || ||||| || || ||| || | ||| |||||| || ||||| || |||||||| Sbjct 489405 CGTCGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGG 489464 Query 133588 TATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACAC 133647 | | | || || || ||||| |||||||| || || | || |||| | || || Sbjct 489465 TCTCATGCCCGGCCTCACGTTTTCGAACGAACTCATCTCCCGCGATGAGGGCATGCATAC 489524 Query 133648 CGAATTTGC 133656 ||| || || Sbjct 489525 CGACTTCGC 489533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471793537622012