Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq993 143 3e-28 seq683 118 1e-20 seq506 118 1e-20 seq124 113 6e-19 >seq993 Length=568693 Score = 143 bits (158), Expect = 3e-28 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 868709 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 868768 || ||| ||| || |||||||||||||| | |||||||||| ||||| | |||| Sbjct 486724 ACACGCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGCGAGATCATATCCATGAAGTCGAAC 486783 Query 868769 GGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACA 868828 ||||| | || ||||||||||||| || |||| |||||| |||||||||||| Sbjct 486784 GGGTTCGTCGCGCGGTAGTGCTTTTCGTTCCCAAGCGCGACGAGCAAACGGTCGGCGACA 486843 Query 868829 AACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGAC 868888 ||||||||||| |||||||| ||| | |||||||| |||||||| | ||||| || | | Sbjct 486844 AACTCGATGTATTGGCACATAAGGTCTGCGTTCATACCGATGAGAGAGACCGGGAGTGCC 486903 Query 868889 TC 868890 || Sbjct 486904 TC 486905 Score = 138 bits (152), Expect = 1e-26 Identities = 211/296 (71%), Gaps = 11/296 (4%) Strand=Plus/Minus Query 869172 TATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGC 869231 ||||| || || ||||| ||| | |||||| ||| | ||||||||||||||| | Sbjct 489523 TATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGTGAGGCCGGGCATGAGAC 489464 Query 869232 CGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGG 869291 | |||||||||||||| ||||| | | ||| ||| ||||| ||||| |||||||||| Sbjct 489463 CACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAAGAAGATACCCTCGACGG 489404 Query 869292 CGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACT 869348 | ||||| | | ||| ||||| ||||| | | ||| | ||||| ||||| Sbjct 489403 CTGCAAAAGCAACGAGGCGCTCCGCAAACGCG--GAG----TTCTTGTCCGAAATCCAGC 489350 Query 869349 TCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT 869408 | ||||| |||||||| ||| | | | || | ||||| |||||| || |||| Sbjct 489349 GGAGAGCCCAATCGGCCTTCTTCTTAATGCAGGGGATAGTGTCAATGGCGTCGAACAGGT 489290 Query 869409 GGTC-CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | || | | | | |||||||||| ||||||||||| ||||| || || ||||| Sbjct 489289 GCTCGCGCTGCTG-GGGGTCCTTGATGTAGGTGTCGATGAGGAGAGAGTACGTCTC 489235 Score = 138 bits (152), Expect = 1e-26 Identities = 144/187 (77%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||||| ||| ||| |||||| ||| || |||||||||||||| | ||| |||||| Sbjct 489884 GCCTTGGAGTAGTCGGAGACGCGCTTCTCAAAGAAGTTGGTCTTGCCTTGGAGTGAGATC 489825 Query 868751 AACTCCATCCACGGGAACGGGTTGGG--CGTCTTGTAGTGCTTTTCGCATCCGAGCGACG 868808 | ||||| | ||||||||||| || | ||| ||||| || ||| || | Sbjct 489824 ATGTCCATGAAGTCGAACGGGTTGGTGACGCC--GTACTGCTTCTCATCTCCAAGGGCGA 489767 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 |||||||||| ||||| || ||||||||||| ||||||||||| |||||||||||| | Sbjct 489766 CGAGCAGGCGATCGGCAACGAACTCGATGTATTGGCACATGAGCTTGGCGTTCATGCCAA 489707 Query 868869 TGAGCGC 868875 ||||||| Sbjct 489706 TGAGCGC 489700 Score = 105 bits (116), Expect = 8e-17 Identities = 212/308 (69%), Gaps = 10/308 (3%) Strand=Plus/Plus Query 869158 GGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAG 869217 ||||||| || ||||| || || ||||| ||| | |||||| ||| | ||| Sbjct 487062 GGCAAAGTCGG---TATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGTGAG 487118 Query 869218 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAA 869277 |||||||||||| || |||||||||||||| ||||| | | ||| ||| ||||| || Sbjct 487119 GCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAAGAA 487178 Query 869278 GATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCT- 869336 || ||||||||||| || || | | |||| ||| | ||| | | ||| | Sbjct 487179 AATTCCCTCGACGGCTGCGAATGCAACTAGCCTCTCCGAAAA---GACAGAATTCTCGTC 487235 Query 869337 TGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGG 869396 || | ||||| | ||||||||| ||||| ||| | | | || | || || || | Sbjct 487236 TGCT-ATCCAGCGTAACGCCCAGTCAGCCTTCTTCTTGATGCAAGGTATTGTCTCTATAG 487294 Query 869397 CGCGAAAGAGG-TGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAA 869455 || |||||| || | ||| | |||||||||| || |||||||| ||||| || Sbjct 487295 CGTCGAAGAGGAAAGTGC-GCTCGACAGGGTCCTTGATGTATGTGTCGATGAGGAGGGAG 487353 Query 869456 TAGGTCTC 869463 || ||||| Sbjct 487354 TACGTCTC 487361 >seq683 Length=250590 Score = 118 bits (130), Expect = 1e-20 Identities = 246/359 (69%), Gaps = 17/359 (5%) Strand=Plus/Plus Query 1726686 GCGGCTGGGCG-GCGGCGCGCACGGCGTCGAGTGCCGTCGCCACGCTCCCGTCGGTGCCG 1726744 |||||| | || ||||| |||| |||| || | |||| | ||||| || | Sbjct 104438 GCGGCTCGCCGCGCGGCACGCA-----TCGATCGCGATGCCCACCGTGCCGTCCGTCGAG 104492 Query 1726745 TTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCG 1726804 |||||||||||| | | || || || || |||| | ||||||||| |||||||||||| Sbjct 104493 TTCTTGAAGCCGGTCGGCATCGAGAGCGCAGACGTGAGCTCGCGGTGGACCTGGCTCTCG 104552 Query 1726805 GTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCAAATAAGGGGCCACCAGA 1726864 |||||||||||||| | ||||||||| | || ||||| ||| || ||| | Sbjct 104553 GTCGTGCGCGCGCCGATGGCGCCCCAGGAGACGAGGTCGGCCGTGTACTGGGGGGAGATC 104612 Query 1726865 GGACTGAGAAACTCG--ACGGCCACG--GGCTGATCGACGGCGACGACGAGATCGCGCAA 1726920 | |||||||||| || | | | ||| ||| ||||||| |||| | | | Sbjct 104613 GTGTCGAGAAACTCGCAACCGGCGGGGAGGCCCATC-TTGGCGACGTCGAG---GAGGAG 104668 Query 1726921 CAGGCGGCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTC 1726980 | || |||||| || | ||||| | | | || | | || | || ||||| Sbjct 104669 CGTGC-GCGCGAGGCGG--AGGCCCTTGTTGATCTGGAAGCTGCTGTTCATCTCCGGGTC 104725 Query 1726981 GCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGA 1727039 | || ||||||||||| |||||||||||||| ||||| |||| |||| | ||||||| Sbjct 104726 GTTGATGAGGCCCTTCCAGCCGACGGTCGTGCGGGGCTTCTCGAAATAGACACGCATGA 104784 >seq506 Length=319592 Score = 118 bits (130), Expect = 1e-20 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1627864 AACACGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGG 1627923 ||| |||| |||||||||||||| |||| ||| ||||| |||||||||| |||||||| Sbjct 219539 AACGCGTCCGCGAGGCCCTGCACACCGATGCCAATCGGACGGTGGCGCATGTTCGAGTTC 219480 Query 1627924 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACG 1627983 |||||||| || | |||||||| ||| ||||| | |||||| |||||| | | ||| Sbjct 219479 CGGGCCTCAGGAATCGGGTAGTAGTTCGCATCGATGATGCGGTTCAGGTTGAACGCGACG 219420 Query 1627984 ACCTGGACGATCTCGTGCAG 1628003 |||| ||| ||||| || Sbjct 219419 ACCTTTGCGACGTCGTGGAG 219400 >seq124 Length=125365 Score = 113 bits (124), Expect = 6e-19 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 19052 CATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTG 19111 |||||||||||| || || |||||| || ||||| || | ||| |||||||||| Sbjct 89856 CATCGGCGGCACCGTCACCTGCGTGATCCGGAACGTCCCCTCCGGCATCGGCGAGCCCGT 89915 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 ||| |||||| |||| ||| |||||| ||||||||||| || ||||| |||||||| | Sbjct 89916 CTTCGACAAGCTCGAAGCCAAGCTCGCACACGCCATGCTCTCCATCCCCGCCACCAAAGC 89975 Query 19172 ATTCGAGATTGG 19183 |||||||| || Sbjct 89976 CTTCGAGATCGG 89987 Score = 98.7 bits (108), Expect = 1e-14 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 19613 GCGCAGCAGACGTGCGAA-TACGGCGGCGAGCAGGCCACGTTGGAGGCGCGCGGGAGGCA 19671 |||||| |||| ||| | |||| |||| | || ||| | | |||| | || ||||| Sbjct 90166 GCGCAGGCGACG-GCGCAGTACGACGGCACCCCGGGGACGCTCGCGGCGAGGGGCAGGCA 90224 Query 19672 CGACCCGTGCGTCGTCGCGCGCGCGGTCCCCATCGTCGAGGCCATGGCGGCCATGGTCCT 19731 ||||||||||||||| | || ||||| |||||||||||||| |||||||| |||| | Sbjct 90225 CGACCCGTGCGTCGTGCCCCGGGCGGTGCCCATCGTCGAGGCGATGGCGGCGCTGGTGGT 90284 Query 19732 CGCCGATGCGGCGCTGCTGCAACTCGCGCGC 19762 ||||||| |||| |||| ||||||| Sbjct 90285 TATGGATGCGGTGCTGGTGCAGAACGCGCGC 90315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107034485464492