Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1041 102 7e-17 seq606 102 7e-17 seq495 102 7e-17 seq506 96.9 3e-15 >seq1041 Length=164984 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | || Sbjct 55188 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGTCTTCC 55129 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| || || || |||||||| || Sbjct 55128 GACACCATTGATAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 55069 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || ||||| ||||| |||||| | | | || ||||| ||| Sbjct 55068 CAGCGTCTTATCTTCGCGGGGAAGCAGCTTGAGGATGGTCGCACTCTTTCCGATTACAAC 55009 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || |||||||| || || ||| Sbjct 55008 ATCCAGAAGGAATCCACTCTCCAC 54985 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || |||||||| || || || | Sbjct 54908 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACGCTCGAGGTCGAGTCCTCT 54849 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || ||||| Sbjct 54848 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 54789 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | ||||| || || || ||||||||||| | | |||| || || ||| Sbjct 54788 CAACGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCTGACTACAAC 54729 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| || || || ||| Sbjct 54728 ATCCAGAAGGAGTCAACGCTGCAC 54705 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/213 (70%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || |||||||| || || | | Sbjct 54680 ATGCAGATTTTCGTCAAGACCCTCACTGGGAAGACGATCACGCTCGAGGTCGAGTCTTCG 54621 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || ||||| || Sbjct 54620 GACACGATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATTCCGCCCGACCAG 54561 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || || | || || || || || |||||||||||| ||| || | |||| || |||| Sbjct 54560 CAGCGCCTTATTTTCGCGGGCAAGCAGCTGGAGGATGGTCG-GACTC-TGTCCGACTATA 54503 Query 24882 ACATTCAAAAGGAATCGACACTACA-CTTGGTG 24913 | || || ||||| || || || || ||||||| Sbjct 54502 ATATCCAGAAGGAGTCTACTCTTCACCTTGGTG 54470 >seq606 Length=277477 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || |||||||| || || | || Sbjct 253017 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACGCTCGAGGTCGAGTCGTCC 253076 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 253077 GACACGATCGATAACGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAG 253136 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||||| |||||| | | | || ||||| ||| Sbjct 253137 CAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGATGGTCGTACGCTCTCCGATTACAAC 253196 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| ||||| || ||| Sbjct 253197 ATCCAGAAGGAGTCGACGCTCCAC 253220 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| ||| | || || || ||||| || || ||||| || | | Sbjct 253298 ATGCAGATCTTCGTTAAGACGTTGACGGGCAAGACTATCACTCTTGAAGTGGAGTCTTCG 253357 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || || || || |||||||| Sbjct 253358 GACACGATCGACAACGTCAAGGCGAAGATCCAGGATAAGGAGGGCATTCCGCCCGATCAG 253417 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||| || ||||| || || || || || | | | | || || || ||| Sbjct 253418 CAGCGCTTGATTTTCGCCGGCAAGCAACTCGAAGACGGTCGTACCCTTTCCGACTACAAC 253477 Query 24884 ATTCAAAAGGA 24894 ||||| ||||| Sbjct 253478 ATTCAGAAGGA 253488 >seq495 Length=337734 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || ||||| || || |||||||||||||| || | | Sbjct 131132 ATGCAAATTTTTGTCAAGACCCTTACCGGGAAGACCATTACGCTCGAAGTCGAGTCGTCG 131073 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || || || || |||||||| Sbjct 131072 GACACGATTGACAATGTCAAGGCGAAGATCCAGGATAAGGAGGGGATCCCGCCCGATCAG 131013 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || ||||| || ||| |||||||| | | | | || || |||||| Sbjct 131012 CAGCGTCTCATTTTCGCCGGCAAGCAGTTGGAGGATGGCCGCACCCTTTCTGACTATAAC 130953 Query 24884 ATTCAAAAGGA 24894 ||||| ||||| Sbjct 130952 ATTCAGAAGGA 130942 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || ||| | || || ||| | | Sbjct 131360 ATGCAGATCTTCGTCAAGACACTCACCGGAAAGACGATCACGTTGGAGGTTGAATCTTCG 131301 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || ||||| || || || || || ||||| || || || Sbjct 131300 GACACAATTGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGCATACCCCCGGACCAG 131241 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||||||||| || ||||| |||||| | | | || ||||| ||| Sbjct 131240 CAGCGTTTGATCTTTGCCGGAAAGCAGCTAGAGGATGGCCGCACTCTTTCGGATTACAAC 131181 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| || || || ||| Sbjct 131180 ATCCAGAAGGAGTCCACTCTTCAC 131157 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | ||||| || || ||||| || || || || | || Sbjct 131640 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTTGAGGTCGAGTCTTCC 131581 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| ||||| ||||| ||||| || || || ||||| Sbjct 131580 GACACGATCGATAACGTCAAGGCCAAA-ATCCAGGACAAGGAAGGTATTCCCCCGGATCA 131522 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | |||||||| || || ||||| ||||| | | | |||| || || || Sbjct 131521 GCAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGGCGTACGTTGTCGGACTACAA 131462 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || ||||| || || || ||| Sbjct 131461 CATCCAGAAGGAGTCTACCCTTCAC 131437 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || |||||||| || | | Sbjct 131868 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAAGTGGAGTCGTCG 131809 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 131808 GACACGATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 131749 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||| ||||| | | | || || || || Sbjct 131748 CAGCGCCTAATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACTCTTTCCGACTACAAT 131689 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || ||| | || | || ||||||| || Sbjct 131688 ATTCAGAAGGAGTCTACCCTTCACCTTGTCCTTCGTCTGCGCGGCGG 131642 >seq506 Length=319592 Score = 96.9 bits (106), Expect = 3e-15 Identities = 281/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Minus Query 138553 GTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATG 138612 ||| | ||||| || |||||||||| ||||||||||| || | ||| || ||||| Sbjct 219866 GTGTAGGGCTCGAAGCATTCGTTGTTGCCCAGAATCTGGCTAGTCGACGCAGTAGGCATA 219807 Query 138613 TACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGA--TTCGTTCCTTGAGCGACG 138670 |||| || || || |||| ||||| | | | |||| ||||||| || Sbjct 219806 GGAGCCAGCAGGAGCGAGTTCCTCAAACCATATTGGGCAACCTTCG--CCTTGAGACTCG 219749 Query 138671 ACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAAC 138730 ||| ||||| | || | || | ||||||||||||||| | | | ||| Sbjct 219748 CCCAATCCCAGAGGTCTGTTGGCGTGACACCCCACATATCGTACTGGAGCTTGCCCTGCG 219689 Query 138731 TTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCG 138790 || || ||||| | ||||| ||||| || ||| | |||| |||| ||||| Sbjct 219688 ACGCCGGGCTGCCCTGGTACGTCTCGTACGGGCCCTGCTCCTTGGCCATCTCGCAGCTCG 219629 Query 138791 CCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGG 138850 |||||| ||| | | ||| || || ||| |||||| | || ||| || |||||| Sbjct 219628 CCTCGACTGCAGCGTGGTAGATGGTCTCGAAGATCTGCAGGTTCAGCTTACGTGCCTCGA 219569 Query 138851 CGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTC 138910 | ||| | |||| || ||| | |||||||||| || || || ||||| || | | Sbjct 219568 CCGAGTCGAATGGCAGCCGCAGCGCCATGAACGCGTCCGCGAGGCCCTGCACACCGATGC 219509 Query 138911 CGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCG--ATAGGATAATAGTTTAC 138968 | | || || ||||||| || || || | | || | || || || ||||| | Sbjct 219508 CAATCGGACGGTGGCGCATGTTCGA--GTTCCGGGCCTCAGGAATCGGGTAGTAGTTCGC 219451 Query 138969 ATCGATGAT 138977 ||||||||| Sbjct 219450 ATCGATGAT 219442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449890424133280