Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq385 284 2e-71 seq140 127 3e-24 seq131 127 3e-24 >seq385 Length=1006 Score = 284 bits (314), Expect = 2e-71 Identities = 325/431 (75%), Gaps = 8/431 (2%) Strand=Plus/Plus Query 35452 GGGTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGT 35511 ||||||| || |||||||||||| || ||||||||||||||||| || | ||||| Sbjct 365 GGGTCACGCCGCGCTGGCCCTGGTACTTGCCGCCGCGATCCTTGTAGGACACCTCGCAAG 424 Query 35512 CCTCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCG 35571 ||||||| | | ||||||||||| ||||| || ||||| ||||| | |||| Sbjct 425 CCTCGTCGGATTGCAGGAACAGCATCTGGGCCACGCCCTCGTTGGCGTAGATCTTGGCCG 484 Query 35572 GCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCG 35631 ||||| |||| |||||| ||||||||| ||||| || ||||||||||| || ||||||| Sbjct 485 GCAGGGTGGTGGTGTTGGAGAACTCCAGGGTCACGTGCCCTTCCCACTCGGGCTCCAGCG 544 Query 35632 GCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGA 35691 | || |||||||||||||| || || || || ||||||||||| |||| || | | Sbjct 545 GGGTGACGTTGACGATGATGCCGCAACGGGCATAGGTGCTCTTGCCCAGGCAGATGGTCA 604 Query 35692 GGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCG 35751 |||||| ||||||||||||||| ||||| || ||||| ||||| |||||| |||||||| Sbjct 605 GGACGTCGCGCGGAATGCGGAAATATTCCACGGTGCGCGCCAGGGCGAAGGAGTTCGGCG 664 Query 35752 GAATCAGGATGCTGTCAGCCTTAAC--CGGCTGC-AGGCACTTGGGATCGAAGTTCTTCG 35808 | || ||||| | | | | || || | | | || |||| ||||||||||| | Sbjct 665 GGAT---GATGCAGACGTCGCTGACCACGTCGACAAAGCTCTTGTCGTCGAAGTTCTTGG 721 Query 35809 GATCAACCACTGCGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCA-CGCACG 35867 |||| ||||| || | |||||||||||| || | | || | ||| ||| |||||| Sbjct 722 GATCCACCACCGCCGAATGGATGTTGGTGAACACCTTGAATTCGTTGGC-GCAGCGCACG 780 Query 35868 TCATAACCATA 35878 || || || || Sbjct 781 TCGTAGCCGTA 791 >seq140 Length=1172 Score = 127 bits (140), Expect = 3e-24 Identities = 78/83 (94%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 120226 TTGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGA 120285 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 981 TTGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGA 1040 Query 120286 TCCCTGATGCCGGCACCATATTC 120308 |||| |||||||||||| ||| Sbjct 1041 CTCCTGGTGCCGGCACCATCTTC 1063 >seq131 Length=1179 Score = 127 bits (140), Expect = 3e-24 Identities = 96/113 (85%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 247008 AGACGTGCGATGATTTCGGAGTTCATGCTGCGATGGTGCGTACGGGCAACGTCCGCGATG 247067 ||||| ||||||||||||||||||||||||||||| || | ||||| || ||||||||| Sbjct 432 AGACGCGCGATGATTTCGGAGTTCATGCTGCGATGATGGTTGCGGGCCACATCCGCGATG 373 Query 247068 CGTTCGCGCATGCCATCCGGCAAACGCACGACAAACTTGTCGGCGCTGCGGCT 247120 || || |||||||| || |||| ||||||||| || ||||| ||| | ||||| Sbjct 372 CGCTCTCGCATGCCCTCGGGCAGACGCACGACGAATTTGTCAGCGGTACGGCT 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825903626627040