Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq993 167 4e-35 seq683 123 4e-22 seq506 114 2e-19 >seq993 Length=568693 Score = 167 bits (184), Expect = 4e-35 Identities = 237/330 (72%), Gaps = 9/330 (3%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || || ||||| ||| | |||||| ||| ||||||||||||||| || |||||| Sbjct 489515 CCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGTGAGGCCGGGCATGAGACCACGCTTC 489456 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||| | ||| ||| ||||| ||||| ||||||||||| ||||| Sbjct 489455 TTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAAGAAGATACCCTCGACGGCTGCAAAA 489396 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | ||||| ||||| ||||| | | || | | | | ||||| | ||||| Sbjct 489395 GCAACGAGGCGCTCCGCAAACGCG--GAGTTCTTGTCCG-AAATCCAGCGGAGAGCCCAA 489339 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC---CTTC 794577 || ||||| ||| | | |||| | ||||| |||||| || ||||| || || | Sbjct 489338 TCGGCCTTCTTCTTAATGCAGGGGATAGTGTCAATGGCGTCGAACAGGTGCTCGCGCTGC 489279 Query 794578 TCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 | | |||||||||| |||||||||||||||||| ||||| ||||| ||||| ||||| Sbjct 489278 TGG---GGGTCCTTGATGTAGGTGTCGATGAGGAGAGAGTACGTCTCGGAGTGAATGTTC 489222 Query 794638 TCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 || || |||||||| || || || ||| Sbjct 489221 TCCATCATAATCTGGAAACCGTAGAAACAG 489192 Score = 152 bits (168), Expect = 8e-31 Identities = 237/330 (72%), Gaps = 9/330 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || || ||||| ||| | |||||| ||| ||||||||||||||| || |||||| Sbjct 487081 CCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGTGAGGCCGGGCATGAGACCACGCTTC 487140 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||| | ||| ||| ||||| || || ||||||||||| || || Sbjct 487141 TTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAAGAAAATTCCCTCGACGGCTGCGAAT 487200 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCC-CTCTT-TGTTGATCCACTTCATCGCCC 794518 | || |||| ||| | ||||| ||| ||| | || | ||||| | ||||| Sbjct 487201 GCAACTAGCCTCTCCG-AAAAGA---CAGAATTCTCGTCTGCT-ATCCAGCGTAACGCCC 487255 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTG-GTCCTTC 794577 | || ||||| ||| | | | || | || || || ||| |||||| || | | Sbjct 487256 AGTCAGCCTTCTTCTTGATGCAAGGTATTGTCTCTATAGCGTCGAAGAGGAAAGTGCG-C 487314 Query 794578 TCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 ||||| |||||||||| ||| |||||||||||||| ||||| |||||||| || | ||| Sbjct 487315 TCGACAGGGTCCTTGATGTATGTGTCGATGAGGAGGGAGTACGTCTCTGAATGCACATTT 487374 Query 794638 TCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 || || |||||||||||| || |||||| Sbjct 487375 TCAATCATGATCTGGAAGCCGTAGAAGCAG 487404 Score = 132 bits (146), Expect = 8e-25 Identities = 150/197 (76%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||||| || ||| |||||| ||| || |||||||||||||| | || Sbjct 489892 TGACACCGGCCTTGGAGTAGTCGGAGACGCGCTTCTCAAAGAAGTTGGTCTTGCCTTGGA 489833 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGC--CGTCAGGTAGTGCTTCTCGCACCC 794008 | ||||||| ||||| | ||||||||||| || | ||| |||||||| || Sbjct 489832 GTGAGATCATGTCCATGAAGTCGAACGGGTTGGTGACGCC--GTACTGCTTCTCATCTCC 489775 Query 794009 GAG--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCG 794066 || ||||| |||||||| ||||| ||||| || ||||| ||||||||||| |||| Sbjct 489774 AAGGGCGACG--AGCAGGCGATCGGCAACGAACTCGATGTATTGGCACATGAGCTTGGCG 489717 Query 794067 TTCATGCCGATGAGCGC 794083 |||||||| |||||||| Sbjct 489716 TTCATGCCAATGAGCGC 489700 Score = 129 bits (142), Expect = 9e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 793898 CGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 793957 |||| ||| ||| || || ||| ||| || |||||||||||||| | |||||||| Sbjct 486705 CGCCATGGAATAATCTGAAACACGCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGCGAGAT 486764 Query 793958 CAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGC 794017 || ||||| | ||||||||| | || |||||||||| ||| ||| |||| | Sbjct 486765 CATATCCATGAAGTCGAACGGGTTCGTCGCGCGGTAGTGCTTTTCGTTCCCAAGCGCGAC 486824 Query 794018 AAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGAT 794077 |||| ||||||||||| || || ||||| |||||||| ||| | |||||||| ||||| Sbjct 486825 GAGCAAACGGTCGGCGACAAACTCGATGTATTGGCACATAAGGTCTGCGTTCATACCGAT 486884 Query 794078 GAGCGCCACGGGCAGCGACTC 794098 ||| | || || || | ||| Sbjct 486885 GAGAGAGACCGGGAGTGCCTC 486905 >seq683 Length=250590 Score = 123 bits (136), Expect = 4e-22 Identities = 235/340 (69%), Gaps = 12/340 (4%) Strand=Plus/Plus Query 2175049 GCACGGCATCGAGCGCCGTTGCCACGCTGCCGTCGGTGCCGTTTTTAAACCCGACCGGCA 2175108 ||||| |||||| ||| | |||| ||||||| || ||| || || ||| ||||| Sbjct 104453 GCACG-CATCGATCGCGATGCCCACCGTGCCGTCCGTCGAGTTCTTGAAGCCGGTCGGCA 104511 Query 2175109 ACGGCAGCGCCGACGCCATTTCGCGGTGCACCTGGCTCTCGGTGGTGCGCGCGCCCACGG 2175168 || ||||| |||| | |||||||| |||||||||||||| ||||||||||| | || Sbjct 104512 TCGAGAGCGCAGACGTGAGCTCGCGGTGGACCTGGCTCTCGGTCGTGCGCGCGCCGATGG 104571 Query 2175169 CGCCCCACGCCACGAGGTCTGCC---AAATAGGGCGCCACCAAAGGGCTGAGAAACTCGA 2175225 ||||||| | |||||||| ||| | | ||| | | | | | |||||||||| Sbjct 104572 CGCCCCAGGAGACGAGGTCGGCCGTGTACTGGGGGGAGATC---GTGTCGAGAAACTCGC 104628 Query 2175226 CAGCCACGGGCTGGCCGACGTCGACGACCAGGTCGCGCAGCAGTCGACGCGATGTGGC-G 2175284 | | |||| |||| | | | |||| |||| | || || |||| | ||| | Sbjct 104629 AACCGGCGGGGAGGCCCATCTTGGCGAC---GTCGAGGAGGAGCGTGCGCG-CGAGGCGG 104684 Query 2175285 AGGCCGGCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCAC 2175344 ||||| | | || | | || | || |||||| || ||||||||||| Sbjct 104685 AGGCCCTTGTTGATCTGGAAGCTGCTGTTCATCTCCGGGTCGTTGATGAGGCCCTTCCAG 104744 Query 2175345 CCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGA 2175384 |||||||||||||| ||||| |||| |||| | ||||||| Sbjct 104745 CCGACGGTCGTGCGGGGCTTCTCGAAATAGACACGCATGA 104784 >seq506 Length=319592 Score = 114 bits (126), Expect = 2e-19 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2070133 AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGC 2070192 |||||||| || ||||||||||| |||| ||| ||||| |||||||||| |||||||| | Sbjct 219539 AACGCGTCCGCGAGGCCCTGCACACCGATGCCAATCGGACGGTGGCGCATGTTCGAGTTC 219480 Query 2070193 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTG 2070243 |||||||| || | |||||||| ||| ||||| | |||||| |||||| Sbjct 219479 CGGGCCTCAGGAATCGGGTAGTAGTTCGCATCGATGATGCGGTTCAGGTTG 219429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916110666060164