Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq495 132 3e-26 seq1041 122 6e-23 seq606 118 7e-22 seq855 87.8 1e-12 >seq495 Length=337734 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| |||||||||||| || ||||| || || | || | || Sbjct 131657 AGGACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCC 131716 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || || |||||||| |||| | ||||||||||| Sbjct 131717 TCGAGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 131776 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | |||| || | ||| || || | ||| || ||| Sbjct 131777 TGGATCTTGGCCTTGACATTGTCAATCGTGTCCGACGACTCCACTTCGAGGGTGATCGTC 131836 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || |||||||||||||| ||||||||||||||| Sbjct 131837 TTGCCCGTGAGGGTCTTGACAAAGATCTGCATG 131869 Score = 131 bits (144), Expect = 1e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 34772 AGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGT 34831 ||||| | |||||||||||||||||||||||||| || ||| |||| |||| |||| Sbjct 130927 AGGTGGAGCGTGCTCTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCATCCTCCAAC 130986 Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891 ||||| |||||||| || || || ||||| || |||| | ||||||||| || | || Sbjct 130987 TGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTTATCCTGGATC 131046 Query 34892 TTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951 || ||||| | |||| || | |||||| || | || |||||||| || Sbjct 131047 TTCGCCTTGACATTGTCAATCGTGTCCGACGACTCGACTTCGAGCGTAATGGTCTTCCCG 131106 Query 34952 GTGAGGGTCTTTACAAAGATCTGCATG 34978 || |||||||| ||||| || |||||| Sbjct 131107 GTAAGGGTCTTGACAAAAATTTGCATG 131133 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| ||||||||| ||||| || ||||| || |||| |||| Sbjct 131149 AGAACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCC 131208 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||| ||||||| || |||||||| | || | |||||||| || Sbjct 131209 TCTAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCCGGGGGTATGCCCTCCTTATCC 131268 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | || || || | || || ||| Sbjct 131269 TGAATCTTCGCCTTCACGTTGTCAATTGTGTCCGAAGATTCAACCTCCAACGTGATCGTC 131328 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| ||||| ||||| || |||||||||||| Sbjct 131329 TTTCCGGTGAGTGTCTTGACGAAGATCTGCATG 131361 Score = 105 bits (116), Expect = 4e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 34772 AGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGT 34831 ||||||| ||| ||||||||| ||||| |||||||| | | ||| | || || || Sbjct 131435 AGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTACGCCCGTCCTCAAGC 131494 Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891 ||||| || || ||||| || || ||||| || | || | || |||||||| | ||| Sbjct 131495 TGCTTACCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCTTCCTTGTCCTGGATT 131554 Query 34892 TTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951 || |||||| | |||| || | |||||| |||| ||| |||||||| || Sbjct 131555 TTGGCCTTGACGTTATCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATGGTCTTGCCG 131614 Query 34952 GTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||||| || ||||||||||| Sbjct 131615 GTCAACGTCTTCACGAAGATCTGCAT 131640 Score = 96.9 bits (106), Expect = 2e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| ||||||||||||||| |||||||| ||| | || | || Sbjct 131885 AGGACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAGAGGGTACGGCCGTCC 131944 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || || ||||| |||||||||||||| || |||||||| Sbjct 131945 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 131982 >seq1041 Length=164984 Score = 122 bits (134), Expect = 6e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| || || || || |||| |||| || || ||||| || |||||| Sbjct 54998 TCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAAGCTGCTTCCCCGCGAAG 55057 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || || |||||||| | || | ||||||||||| | || ||| |||||| Sbjct 55058 ATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTA 55117 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || | |||||| |||| || |||||||| |||||||||||||| || Sbjct 55118 TCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTCACG 55177 Query 34967 AAGATCTGCATG 34978 |||||||||||| Sbjct 55178 AAGATCTGCATG 55189 Score = 109 bits (120), Expect = 4e-19 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||| ||||| ||||| || || |||| | || Sbjct 54697 AGGACAAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCC 54756 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || |||||||| || |||||||| || | || | ||||||||||| Sbjct 54757 TCCAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGATCAGGGGGAATGCCCTCCTTGTCC 54816 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || | ||||| ||| || |||||| || | || || Sbjct 54817 TGGATCTTCGCCTTCAC--AT--TGTCGATGGTGTCAGAGGACTCGACCTCGAGCGTGAT 54872 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || || ||||| || ||||||||||| Sbjct 54873 GGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 54908 Score = 105 bits (116), Expect = 4e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 34772 AGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGT 34831 ||||||| || ||||||||| || |||||||| || || | || |||| ||||| Sbjct 54475 AGGTGAAGAGTAGACTCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCTCCAGC 54534 Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891 ||||| || ||||| || || || |||||||| |||| | ||||||||||| | || Sbjct 54535 TGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGAATC 54594 Query 34892 TTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951 || ||||| | |||| || | |||||| || | || || ||||| || Sbjct 54595 TTCGCCTTGACATTGTCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTCCCA 54654 Query 34952 GTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||||| || || |||||||| Sbjct 54655 GTGAGGGTCTTGACGAAAATCTGCAT 54680 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| ||||||||||||||| |||||||| || |||| | || Sbjct 55205 AGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 55264 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || || ||||| || |||||||||| || |||||||| Sbjct 55265 TCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTC 55302 >seq606 Length=277477 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||||| |||||||| || || ||||| || || ||||| | || Sbjct 253792 AGGACAAGGTGGAGGGTGCTTTCCTTCTGGATATTGTAGTCAGAGAGCGTGCGCCCGTCC 253733 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || || || ||||| | || | ||||||||||| Sbjct 253732 TCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCC 253673 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | |||| || || |||||| || | || || ||| Sbjct 253672 TGAATCTTGGCCTTCACGTTATCGATCGTGTCCGAGGACTCGACTTCCAACGTGATCGTC 253613 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || |||||||| ||||| || || ||||||||| Sbjct 253612 TTGCCCGTGAGTGTCTTGACGAATATCTGCATG 253580 Score = 116 bits (128), Expect = 2e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 34772 AGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGT 34831 ||||| | |||||||||||||||||||| ||||| || ||| | || | || || ||| Sbjct 253503 AGGTGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCGAGT 253444 Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891 ||||| |||||||| |||| || ||||| || |||| | |||||||| || | || Sbjct 253443 TGCTTGCCGGCGAAAATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTTATCCTGGATC 253384 Query 34892 TTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951 || |||||| | |||| || | ||| || |||| || || ||||| ||| Sbjct 253383 TTCGCCTTGACGTTGTCGATCGTGTCCGAAGACTCCACTTCAAGAGTGATAGTCTTGCCC 253324 Query 34952 GTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||||| || |||||||||||| Sbjct 253323 GTCAACGTCTTAACGAAGATCTGCATG 253297 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| || || || || | || |||| || || ||||| || || || Sbjct 253208 CTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGCTGCTTGCCCGCAAA 253149 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| || |||||||| | || | ||||||||||| | || || |||||| Sbjct 253148 GATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 253089 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | |||| || | |||||| || | || |||||||| || || | |||||| || Sbjct 253088 ATCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAAGGTCTTGAC 253029 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 253028 AAAGATCTGCAT 253017 >seq855 Length=205711 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| |||| ||||||||| ||||| ||||| ||| |||| |||| Sbjct 132359 AGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 132418 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || || ||||| |||||||||||||| || |||||||| Sbjct 132419 TCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 132456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325687735069844