Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq495 122 2e-22 seq1041 113 1e-19 >seq495 Length=337734 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| ||||| |||||||| ||||| || ||| ||| ||| Sbjct 131357 CAGATCTTCGTCAAGACACTCACCGGAAAGACGATCACGTTGGAGGTTGAATCTTCGGAC 131298 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| |||||||| || || || || || |||||| || Sbjct 131297 ACAATTGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGCATACCCCCGGACCAGCAG 131238 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| |||||||||||| | || ||||| | ||| | | ||||||||| || Sbjct 131237 CGTTTGATCTTTGCCGGAAAGCAGCTAGAGGATGGCCGCACTCTTTCGGATTACAACATC 131178 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| ||||||||||| ||| Sbjct 131177 CAGAAGGAGTCCACTCTTCACCTCGTT 131151 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || |||||||| | |||||||| || ||| Sbjct 131865 CAGATCTTTGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAAGTGGAGTCGTCGGAC 131806 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || || ||| ||| || Sbjct 131805 ACGATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAG 131746 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || || || | ||| | |||| ||||| | Sbjct 131745 CGCCTAATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACTCTTTCCGACTACAATATT 131686 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| ||||||||||| Sbjct 131685 CAGAAGGAGTCTACCCTTCACCTTGT 131660 >seq1041 Length=164984 Score = 113 bits (124), Expect = 1e-19 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || |||||||| | || || || ||| ||| Sbjct 54677 CAGATTTTCGTCAAGACCCTCACTGGGAAGACGATCACGCTCGAGGTCGAGTCTTCGGAC 54618 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || || || ||| ||| ||| || Sbjct 54617 ACGATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATTCCGCCCGACCAGCAG 54558 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||| ||||| || |||||| |||| ||||| ||||| || |||| || || || Sbjct 54557 CGCCTTATTTTCGCGGGCAAGCAGCTGGAGGATGGTCGGACTCTGTCCGACTATAATATC 54498 Query 206353 CAGAAAGAGTCTACTCTTCACCTTG 206377 ||||| ||||||||||||||||||| Sbjct 54497 CAGAAGGAGTCTACTCTTCACCTTG 54473 Score = 102 bits (112), Expect = 2e-16 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 204765 CAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCA 204824 ||||||||||||||||||| ||||||| ||||||||| | || ||||| ||||| |||| Sbjct 54473 CAAGGTGAAGAGTAGACTCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCTCCA 54532 Query 204825 GCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||| || ||||| ||||| || || || Sbjct 54533 GCTGCTTGCCCGCGAAAATAAGGCGCTGCTG 54563 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || |||||| | || || || ||| ||||| | || Sbjct 55173 AAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGACACCATTGATAAC 55114 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| || || || || || ||| || ||| || | ||||||||| Sbjct 55113 GTCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGTCTTATCTTC 55054 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || ||||| | ||| | ||||||||||| ||||||| || || Sbjct 55053 GCGGGGAAGCAGCTTGAGGATGGTCGCACTCTTTCCGATTACAACATCCAGAAGGAATCC 54994 Query 206365 ACTCTTCACCT 206375 ||||| ||||| Sbjct 54993 ACTCTCCACCT 54983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181801478707196