Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq993 190 3e-42 seq683 111 2e-18 seq506 86.0 9e-11 >seq993 Length=568693 Score = 190 bits (210), Expect = 3e-42 Identities = 378/546 (69%), Gaps = 23/546 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| | |||| | ||||| ||||| ||||| || |||||| | |||| Sbjct 488979 GATCTGGCAAATGTACAAGAAAG-CAGAGGCGTCCTTCTGGACGGCAGAGGAGATGGACC 489037 Query 1455835 TCGGCGCCGA-CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATC 1455890 | | || | | | ||||| ||| | | ||||||||||| |||||||| Sbjct 489038 TTTCCAAGGATCTCCATG-ACTGGAACAACCGCCTCAATGACGACGAGCGTCATTTCATT 489096 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 |||||||| ||||| ||| || || ||| || || || |||||| || | | Sbjct 489097 TCCCACGTCCTTGCCTTCTTT-GCAGCATCCGACGGTATTGTCAACGAGAATCTCGTAGA 489155 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 || || || || || || | | ||||| || | || ||||| |||||||| Sbjct 489156 ACGGTTCTCCAACGAAGTTCAGGCGGCGGAGGCTCGCTGTTTCTACGGTTTCCAGATTAT 489215 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||| ||||| || || ||||| ||||| |||||||||||| |||||||||| Sbjct 489216 GATGGAGAACATTCACTCCGAGACGTACTCTCTCCTCATCGACACCTACATCAAGGACCC 489275 Query 1456071 GGTCGAGAAG---GACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127 | || || || ||||| || |||||| ||||| | || | | | ||| || Sbjct 489276 ---CCAGCAGCGCGAGCACCTGTTCGACGCCATTGACACTATCCCCTGCATTAAGAAGAA 489332 Query 1456128 GGCCGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCGAGCGG 1456184 |||||| ||||| | ||||| ||||| | ||| | ||||| ||||| Sbjct 489333 GGCCGATTGGGCTCTCCGCTGGATTTCGGACAAGAA----CTCCGC-GTTTGCGGAGCGC 489387 Query 1456185 CTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTT 1456243 ||||| | ||||| | ||||||||| ||||| ||||| ||| ||| | | ||||| Sbjct 489388 CTCGTTGCTTTTGCAGCCGTCGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCTATCTTC 489447 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCG 1456303 |||||||||||||| || ||||||||||| || | ||| | |||||| | ||| || Sbjct 489448 TGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTCACGTTTTCG-AACGAACTCATCTCCCG 489506 Query 1456304 CGACGA 1456309 ||| || Sbjct 489507 CGATGA 489512 Score = 134 bits (148), Expect = 2e-25 Identities = 153/200 (77%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 1456580 GCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639 |||||||| ||||||||||||| |||||||||||| ||||| || || || ||||| | Sbjct 489700 GCGCTCATTGGCATGAACGCCAA-GCTCATGTGCCAATACATCGAGTTC-GTTGCCGATC 489757 Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699 ||||||||| || || || | |||||||| ||| | ||||||||||| | Sbjct 489758 GCCTGCTCGTCGCCCTTGGA-GATGAGAAGCAGTACGGCGTCACCAACCCGTTCGACTTC 489816 Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTAC 1456758 ||||| ||||||| ||| | |||||||||||||| || ||| ||||| ||| ||| Sbjct 489817 ATGGACATGATCTCACTCCAAGGCAAGACCAACTTCTTTGAGAAGCGCGTCTCCGACTAC 489876 Query 1456759 GCCAAGGCCGGCGTCACCGC 1456778 |||||||||| |||| ||| Sbjct 489877 TCCAAGGCCGGTGTCAACGC 489896 Score = 120 bits (132), Expect = 4e-21 Identities = 135/177 (76%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 1456565 GAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGA 1456624 ||| | || ||||| | |||||||| |||||||| | || |||||||| ||||| || Sbjct 486905 GAGGCACTCCCGGTCTCTCTCATCGGTATGAACGCAGAC-CTTATGTGCCAATACATCGA 486847 Query 1456625 ATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC 1456684 ||| ||||||||||| |||||| ||||| || || | ||||||||||| || | Sbjct 486846 GTTT-GTCGCCGACCGTTTGCTCGTCGCGCTTGGGAACGAA-AAGCACTACCGCGCGACG 486789 Query 1456685 AACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||||||||| | ||||| |||||||||| | |||||||||||||| || ||| Sbjct 486788 AACCCGTTCGACTTCATGGATATGATCTCGCTTCAAGGCAAGACCAACTTCTTTGAG 486732 >seq683 Length=250590 Score = 111 bits (122), Expect = 2e-18 Identities = 111/143 (78%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 165749 GGCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCG 165808 ||| ||||| ||| | ||||||||| |||| |||||||| |||||||||||||| ||||| Sbjct 104594 GGCCGACCTCGTCTCCTGGGGCGCCATCGGCGCGCGCACGACCGAGAGCCAGGTCCACCG 104535 Query 165809 CGAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT 165868 |||| | |||| ||||| || |||| | |||||||| ||| || ||||||| || Sbjct 104534 CGAGCTCACGTCTGCGCTCTCGATGCCGACCGGCTTCAAGAACTCGACGGACGGCACGGT 104475 Query 165869 GGCGACGGCCCTCGATGCCGTGC 165891 || | || |||||| ||||| Sbjct 104474 GGGCATCGCGATCGATG-CGTGC 104453 >seq506 Length=319592 Score = 86.0 bits (94), Expect = 9e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 262449 ACTACCCGGTGCCCGAGGCCCGCCACTCGAATCTGCGCCATCGACCGATGGGCGTCGGCG 262508 |||||||| | || |||||||| ||||||| ||||||| || ||||| ||| |||| | Sbjct 219458 ACTACCCGATTCCTGAGGCCCGGAACTCGAACATGCGCCACCGTCCGATTGGCATCGGTG 219517 Query 262509 TGCAGGGCCTCGCCGACGTGTT 262530 ||||||||||||| |||| ||| Sbjct 219518 TGCAGGGCCTCGCGGACGCGTT 219539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177688127454712