Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq606 131 2e-25 seq1041 111 1e-19 seq495 111 1e-19 seq576 107 2e-18 >seq606 Length=277477 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||||| | || || | || || |||||||| |||||||| Sbjct 253208 CTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGCTGCTTGCCCGCAAA 253149 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| ||| | | |||||||||| |||||| ||| | | Sbjct 253148 GATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 253089 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||| ||| || ||||| | |||||| || || || ||||| || || || Sbjct 253088 ATCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAAGGTCTTGAC 253029 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 253028 AAAGATCTGCAT 253017 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 35539 CGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACC 35598 ||| |||||||| ||||||||||| |||| | ||| || |||| || || ||||| || Sbjct 253495 CGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCGAGTTGCTTGCC 253436 Query 35599 CGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTT 35658 || || ||||| |||||||| || | |||| || |||||| ||| |||||| ||| Sbjct 253435 GGCGAAAATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTTATCCTGGATCTTCGCCTT 253376 Query 35659 CAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAG 35717 | |||| | | |||||| || ||||| || | ||||| || || |||||||| | Sbjct 253375 GA-CGTTGTCGATCGTGTCCGAAGACTCCACTTCAAGAGTGATAGTCTTGCCCGTCAACG 253317 Query 35718 TTTTCACAAATATCTGCAT 35736 | || || || |||||||| Sbjct 253316 TCTTAACGAAGATCTGCAT 253298 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || || ||||| || || ||||| || | | || ||| |||| || |||||||| ||| Sbjct 253777 GTGCTTTCCTTCTGGATATTGTAGTCAGAGAGCGTGCGCCCGTCCTCGAGCTGCTTGCCC 253718 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 || || || | ||||| ||||| | ||| | || |||||||||| ||||| |||| Sbjct 253717 GCGAAGATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTC 253658 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | | | |||||| || || || |||| ||||||||| || ||||| | || Sbjct 253657 ACGTTATCGATCGTGTCCGAGGACTCGACTTCCAACGTGATCGTCTTGCCCGTGAGTGTC 253598 Query 35720 TTCACAAATATCTGCAT 35736 || || ||||||||||| Sbjct 253597 TTGACGAATATCTGCAT 253581 >seq1041 Length=164984 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||||| | || || | || || |||||||| ||||| || Sbjct 54998 TCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAAGCTGCTTCCCCGCGAAG 55057 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||| | ||||| || |||||||||| ||||||| ||| | | Sbjct 55058 ATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTA 55117 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| || || ||||| | ||||| || || ||||| | || ||||| Sbjct 55118 TCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTCACG 55177 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 55178 AAGATCTGCAT 55188 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || || || |||| ||||||||||| ||||| || Sbjct 54717 CTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAA 54776 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||| || | |||| || |||||||||| |||||| ||||| | | Sbjct 54777 GATGAGGCGTTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 54836 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || || ||||| | |||||| || || || |||| ||| || || Sbjct 54837 GTCGATGGTGTCAGAGGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAGAGTCTTGAC 54896 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 54897 GAAGATCTGCAT 54908 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || || || |||| || || || | || ||||||||||| ||||| || Sbjct 54489 CTCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCTCCAGCTGCTTGCCCGCGAA 54548 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | |||| | |||||||||| ||||| ||| | | | Sbjct 54549 AATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGAATCTTCGCCTTGACATT 54608 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| || || ||||| | ||||||||| || || || | || || || Sbjct 54609 GTCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTCCCAGTGAGGGTCTTGAC 54668 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 54669 GAAAATCTGCAT 54680 >seq495 Length=337734 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | || || | || || |||||||| || ||||| Sbjct 131169 CTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTCTAGCTGCTTTCCGGCAAA 131228 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||||| || | || |||||| ||| ||||| ||||| || Sbjct 131229 GATCAAACGCTGCTGGTCCGGGGGTATGCCCTCCTTATCCTGAATCTTCGCCTTCA-CGT 131287 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| ||||| ||||||| ||||||||| || || || | || || | Sbjct 131288 TGTCAATTGTGTCCGAAGATTCAACCTCCAACGTGATCGTCTTTCCGGTGAGTGTCTTGA 131347 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 131348 CGAAGATCTGCAT 131360 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | ||| || ||| |||| || ||||||||||| ||||| Sbjct 131449 CTCCTTCTGGATGTTGTAGTCCGACAACGTACGCCCGTCCTCAAGCTGCTTACCAGCAAA 131508 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| |||| |||| | ||||||||| ||| || ||| | | Sbjct 131509 GATAAGACGCTGCTGATCCGGGGGAATACCTTCCTTGTCCTGGATTTTGGCCTTGACGTT 131568 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||| || || ||||| | || || || || || ||||| || ||||| Sbjct 131569 ATCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATGGTCTTGCCGGTCAACGTCTTCAC 131628 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 131629 GAAGATCTGCAT 131640 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||| ||||| |||| | || || |||| || |||||||| || || || Sbjct 131677 CTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAA 131736 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| |||||| ||| | | | Sbjct 131737 GATTAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 131796 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| ||| ||||| || | |||||||| || ||||| | || || || Sbjct 131797 GTCAATCGTGTCCGACGACTCCACTTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGAC 131856 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 131857 AAAGATCTGCAT 131868 >seq576 Length=23070 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||||| | || || |||| || |||||||| |||||||| Sbjct 15026 CTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCGTCCTCGAGCTGCTTTCCCGCAAA 14967 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| | | ||||||| | ||| | | ||||||| || |||||| || | | Sbjct 14966 TATCAGGCACCGCTGGTCAGGAGGGATACCCTCCTTGGCCTGGATCTTCGCTTTGATATC 14907 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||| ||| || ||||| | | ||| || || || ||||| || || || Sbjct 14906 ATCGATCGTGTCGGACGACTCGACCTCGAGCATGACGGTCTTGCCGGTCAAGGTCTTAAC 14847 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 14846 AAAGATCTGCAT 14835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450786409842080