Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq606 147 2e-30 seq495 129 6e-25 seq1041 118 1e-21 seq576 96.9 4e-15 seq428 82.4 8e-11 >seq606 Length=277477 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 134508 AGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGC 134567 ||||| |||||| ||||| ||||||||||||||| || ||| || ||| ||||| Sbjct 253503 AGGTGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCGAGT 253444 Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 || ||||| || |||||||| ||||||||||||||||| ||||| || || || || || Sbjct 253443 TGCTTGCCGGCGAAAATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTTATCCTGGATC 253384 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 || ||||| ||| | ||||| || || ||||| || ||||| || || || || Sbjct 253383 TTCGCCTTGACGTTGTCGATCGTGTCCGAAGACTCCACTTCAAGAGTGATAGTCTTGCCC 253324 Query 134688 GTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| || ||||| Sbjct 253323 GTCAACGTCTTAACGAAGATCTGCAT 253298 Score = 109 bits (120), Expect = 6e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 134506 CGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGA 134565 ||||||| ||||| || ||||| || |||||||| ||| | || || || |||| Sbjct 253224 CGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGA 253165 Query 134566 GCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAA 134625 |||| ||||| ||||| |||| |||||||| || || || || || || || || || | Sbjct 253164 GCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGA 253105 Query 134626 TTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTAC 134685 | || ||||| || | ||||||||||| || || ||||| || ||||| || | Sbjct 253104 TCTTCGCCTTGACGTTATCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGC 253045 Query 134686 CGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || || || || || ||||| Sbjct 253044 CAGTCAAGGTCTTGACAAAGATCTGCAT 253017 >seq495 Length=337734 Score = 129 bits (142), Expect = 6e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 134508 AGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGC 134567 ||||| |||||| ||||| |||||||| ||||| || |||| | || || | | Sbjct 130927 AGGTGGAGCGTGCTCTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCATCCTCCAAC 130986 Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 || ||||| || ||||| | |||||||||||||||||| || || || || || || || Sbjct 130987 TGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTTATCCTGGATC 131046 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 || ||||| ||| | ||||| ||||| || || ||||| |||||||| || ||| Sbjct 131047 TTCGCCTTGACATTGTCAATCGTGTCCGACGACTCGACTTCGAGCGTAATGGTCTTCCCG 131106 Query 134688 GTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || || || ||||||||||| Sbjct 131107 GTAAGGGTCTTGACAAAAATTTGCAT 131132 Score = 122 bits (134), Expect = 9e-23 Identities = 154/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 134506 CGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCG 134564 ||||||| || || || ||||| || ||||||||||| | ||||| | | ||| || Sbjct 131433 CGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACG-TACGCCCGTCCTCA 131491 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || ||||| || | |||||||||||| || || || ||||| || || || Sbjct 131492 AGCTGCTTACCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCTTCCTTGTCCTGG 131551 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 ||||| ||||| || | |||||||| || || || || || |||||||| || Sbjct 131552 ATTTTGGCCTTGACGTTATCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATGGTCTTG 131611 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || ||||| || ||||| Sbjct 131612 CCGGTCAACGTCTTCACGAAGATCTGCAT 131640 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || ||||| ||||| || |||||||| || | Sbjct 131134 CCACCACGGAGACGAAGAACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAA 131193 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| || || ||||| |||||||||||||| || || ||| Sbjct 131194 AGAGTGCGGCCATCCTCTAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCCGGGGGT 131253 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || || || ||| | |||||| || ||||| || Sbjct 131254 ATGCCCTCCTTATCCTGAATCTTCGCCTTCACGTTGTCAATTGTGTCCGAAGATTCAACC 131313 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || || || || ||||| | || || ||||| || ||||| Sbjct 131314 TCCAACGTGATCGTCTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 131360 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || ||||| ||||| |||||||||||||| | ||| | ||| ||| Sbjct 131888 ACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCG 131947 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGC 134610 ||||| ||||| || || |||| |||||||| ||||| || |||| Sbjct 131948 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGC 131993 >seq1041 Length=164984 Score = 118 bits (130), Expect = 1e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134506 CGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGA 134565 ||||||| || ||||||||||| || |||||||| ||| || ||| || || || | Sbjct 54981 CGAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAA 55040 Query 134566 GCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAA 134625 |||| || || || || || | ||||||||| ||||| || ||||| || || || || | Sbjct 55041 GCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGA 55100 Query 134626 TTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTAC 134685 | ||| ||||| || | |||||||| || || || || ||||| ||||| || | Sbjct 55101 TCTTTGCCTTGACGTTATCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGC 55160 Query 134686 CGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | || || ||||| || ||||| Sbjct 55161 CCGTGAGGGTCTTCACGAAGATCTGCAT 55188 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTC 134563 || ||||| ||||| || ||||| || ||||||||||| | || | ||| | ||| || Sbjct 54700 ACAAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCAGACAGC-GTGCGGCCGTCCTC 54758 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 ||||| ||||| || || || | || |||||||| || || ||||| || || || || Sbjct 54759 CAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGATCAGGGGGAATGCCCTCCTTGTCCTG 54818 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || || || ||| | ||||| || || || || ||||| || ||||| || Sbjct 54819 GATCTTCGCCTTCACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGCGTGATGGTCTT 54878 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||| || ||||| || ||||| Sbjct 54879 GCCAGTCAGAGTCTTGACGAAGATCTGCAT 54908 Score = 93.3 bits (102), Expect = 4e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || ||||| ||||| |||||||||||||| | Sbjct 55190 CCACCACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAA 55249 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| ||||| || || ||||| |||||||| ||||| || Sbjct 55250 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 55309 Query 134607 ATGC 134610 |||| Sbjct 55310 ATGC 55313 >seq576 Length=23070 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 134506 CGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGA 134565 ||||||| || || || ||||| || |||||||| ||| | || || ||| |||| Sbjct 15042 CGAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCGTCCTCGA 14983 Query 134566 GCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAA 134625 |||| || || ||||| |||| | | |||| || || || || || || || | || | Sbjct 14982 GCTGCTTTCCCGCAAATATCAGGCACCGCTGGTCAGGAGGGATACCCTCCTTGGCCTGGA 14923 Query 134626 TTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTAC 134685 | || ||||| | || | ||||||||||| || || ||||| | | ||| || | Sbjct 14922 TCTTCGCTTTGATATCATCGATCGTGTCGGACGACTCGACCTCGAGCATGACGGTCTTGC 14863 Query 134686 CGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||| || || ||||| || || ||||| Sbjct 14862 CGGTCAAGGTCTTAACAAAGATCTGCAT 14835 >seq428 Length=363050 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || ||||| ||||| || ||||||||||||| | ||| | Sbjct 255495 AGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGG 255436 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTAT 134608 ||| |||||||| ||||| || || |||| |||||||| ||||| || || Sbjct 255435 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGAT 255383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505390338895520