Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq993 136 5e-27 >seq993 Length=568693 Score = 136 bits (150), Expect = 5e-27 Identities = 371/563 (66%), Gaps = 10/563 (2%) Strand=Plus/Plus Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672 || |||||| ||||| ||| | ||||||||| | || | |||||| ||||| || Sbjct 487056 TAGGCAGGCAAAGTCGGTATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGT 487115 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAA 39732 ||| || ||||| ||||||||||| |||||||| || || | || || || || || || Sbjct 487116 GAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAA 487175 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA--CTTGTATCAT-- 39788 ||| || || || || ||||| |||||||| || ||||||| || | || | Sbjct 487176 GAAAATTCCCTCGACGGCTGCGAATGCAACTAG--CCTCTCCGAAAAGACAGAATTCTCG 487233 Query 39789 TATG-TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATA 39847 | || |||||| ||||| ||||| |||||||| | ||||| ||||| |||||| Sbjct 487234 TCTGCTATCCAGCGTAACGCCCAGTCAGCCTTCTTCTTGATGCAAGGTATTGTCTCTATA 487293 Query 39848 GCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTA 39907 || | ||||| || || || || || | ||||| || || | || Sbjct 487294 GCGTCGAAGAGGAAAGTGCGCTCGACAGGGTCCTTGATGTATGTGTCGATGAGGAGGGAG 487353 Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 ||| | |||||||| | ||||||||| ||||| || ||||| || || | || ||| Sbjct 487354 TACGTCTCTGAATGCACATTTTCAATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCA 487413 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 | || ||||| | || | || | | ||| || || || || || || | Sbjct 487414 GCCGCCTGGACCTCATTGGAGAACCGCTCGACGAGATTCTCGTTGACAATGCCGTCCGAA 487473 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTT---A 40084 ||||| || || || | |||| | | |||| | || | ||| || | || | Sbjct 487474 GCGGCGAAGAAGGCAAGCACATATGAGAGGAAATGTCGCTCGTTGGGCGTGAGCTTGCCA 487533 Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 ||||| || | ||| | || | || | |||||| ||||||| || ||||| | | Sbjct 487534 TTCCAATCCCAAAGATCATGCGAGAGGTCAATTTCTTCTACTGTCCAGAATGACGCTTGT 487593 Query 40145 GCCTTTTTGTACATGTTCCATAT 40167 || | |||||||| | ||| || Sbjct 487594 GCTTGCTTGTACATCTGCCAGAT 487616 Score = 114 bits (126), Expect = 2e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 39606 TAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAG 39665 |||| | ||||| |||||||| ||| | ||||||||| | || | |||||| | Sbjct 489547 TAAAGAGCAAGCAAGCGAAGTCGGTATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCG 489488 Query 39666 AAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATC 39725 |||| ||||| || ||||| ||||||||||| |||||||| || || | || || || | Sbjct 489487 AAAACGTGAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGC 489428 Query 39726 CAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 | || |||||||| || || || |||||||| ||||| || | ||| Sbjct 489427 CGGAGAAGAAGATACCCTCGACGGCTGCAAAAGCAACGAGGCGCTC 489382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686897843804640