Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq993 105 8e-18 seq62 87.8 2e-12 >seq993 Length=568693 Score = 105 bits (116), Expect = 8e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 |||||||| ||||| || ||||| || || || || || ||||||||||| |||||| Sbjct 489515 CCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGTGAGGCCGGGCATGAGACCACGCTTC 489456 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | |||| | ||| || |||||||||||||||||||| || ||||| Sbjct 489455 TTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAAGAAGATACCCTCGACGGCTGCAAAA 489396 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCATTTCATTGCCCATTT 122855 |||| ||||| || || || | | ||| ||| | || ||| | ||||| | Sbjct 489395 GCAACGAGGCGCTCCGCAAACGCG-GAGTTCTTGTCCGAAATCCAGCGGAGAGCCCAATC 489337 Query 122856 CGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCT 122905 |||||||||| ||| || || | ||| | ||||| || || | |||| Sbjct 489336 GGCCTTCTTCTTAATGCAGGGGATAGTGTCAATGGCGTCGAACAGGTGCT 489287 Score = 82.4 bits (90), Expect = 1e-10 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 |||||||| ||||| || ||||| || || || || || ||||||||||| |||||| Sbjct 487081 CCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGTGAGGCCGGGCATGAGACCACGCTTC 487140 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 || | ||| | |||| | ||| || ||||||||||| || ||||| || Sbjct 487141 TTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAAGAAAATTCCCTCGAC 487190 >seq62 Length=1243 Score = 87.8 bits (96), Expect = 2e-12 Identities = 228/348 (66%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214 |||| |||| || || ||| |||| |||||||| |||||||| ||| | || || | Sbjct 677 CCGCTTCTACCAGGCGTCTACCTCGGAGATGTTCGGTAAGGTCCAGGCGATTCCGCAGAT 618 Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 9274 |||| || || || || || ||| |||||| || | ||| | || || || Sbjct 617 CGAGAGCACGCCTTTTTATCCGCGCAGCCCCTACGGCGTGGCCAAGCTCTATGCCCACTG 558 Query 9275 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 9334 | | || || ||||||||||| ||||| | || | | ||| || |||||||| Sbjct 557 GATGACCATCAACTACCGCGAGTCCTACGGCATCTTCGGCACCAGCGGCATTCTCTTCAA 498 Query 9335 CCATGAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTACCGAGGGTATCAA 9394 ||| ||||| ||| || || || || |||||| ||||| ||||| | ||| Sbjct 497 CCACGAATCCCCGCTGCGTGGCCGCGAGTTCGTGACCCGCAAGATCACCGACAGCATCGC 438 Query 9395 ACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGA 9454 | |||| | ||| | ||| | | | |||| ||| | |||| || | || Sbjct 437 CAAGATCAAGGTGGGCAAGCTGGATGTGCTGCAGCTGGGCAACCTCGACGCCAAGCGCGA 378 Query 9455 TTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCA 9502 ||||| ||| ||||| || || || | |||||||| |||||| || Sbjct 377 CTGGGGCTTCGCCAAGGAATACGTCGAGGGTATGTGGCGCATGCTGCA 330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628021982889600