Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq124 111 2e-19 seq993 104 3e-17 seq506 100 4e-16 seq62 96.9 4e-15 >seq124 Length=125365 Score = 111 bits (122), Expect = 2e-19 Identities = 222/319 (70%), Gaps = 20/319 (6%) Strand=Plus/Minus Query 179808 ATCCGTCATAATCATAAGCCGACCATAGCG-AAGCT--CGGAAACATCTTGATAATCCTT 179864 ||||||||||| ||| || || || || || ||| | ||| | | | || || ||||| Sbjct 98088 ATCCGTCATAAGCATGAGACGGCCGTAACGCAAGGTGCCGGTATC--CGTG-TACTCCTT 98032 Query 179865 ACCTTGTTGAAGACCCAAGATCTTCTTGA-GATCATTGAA-CTCTTGGTT-----TGATG 179917 || || | |||| ||||||||||| | || |||| ||| | ||| |||| Sbjct 98031 GTTGTGCTGCAAGCCCATGATCTTCTTGATGTTC--TGAATCTCCTCGTTCTTCATGATC 97974 Query 179918 TGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACAC 179977 || || | || | ||||| || || || |||| ||||| || ||||| |||| Sbjct 97973 TG-GTCGTGCTTC----GCATCGCGCACGTTCAGCAACTTTCCACGAAGCGGGAAGACAC 97919 Query 179978 CGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCAC 180037 || ||| || ||||| || ||| ||||||||||| ||||| | | | |||||||||| Sbjct 97918 CGAAGTTGTCGCGACCGACGACACCGAGACCAGCAATGGCGAGTGCCCTGGCGGAATCAC 97859 Query 180038 CCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCTGCCTTGTTCGCGTCGT 180097 | ||||||| ||||||||| || | || | || ||| || || ||||| ||||| Sbjct 97858 CTTCCGTCAAGATGAGCGTGCAGTCGCCGGCTTTCCTCGTTCCCGCGTTGTTGGCGTCAG 97799 Query 180098 CCAACTTGGGAATACCAGT 180116 || ||||| || ||||| Sbjct 97798 ACAGCTTGGTCATGCCAGT 97780 >seq993 Length=568693 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 ||||| || |||||||||||||| ||||| || || || ||||||||||| |||||| Sbjct 489515 CCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGTGAGGCCGGGCATGAGACCACGCTTC 489456 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | || ||||| ||||||||||| ||||| || || || Sbjct 489455 TTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAAGAAGATACCCTCGACGGCTGCAAAA 489396 Query 130154 GCAAAGAGACGCTCAGCAAA 130173 |||| ||| ||||| ||||| Sbjct 489395 GCAACGAGGCGCTCCGCAAA 489376 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 ||||| || |||||||||||||| ||||| || || || ||||||||||| |||||| Sbjct 487081 CCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGTGAGGCCGGGCATGAGACCACGCTTC 487140 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | || ||||| |||||||| || ||||| || ||||| Sbjct 487141 TTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAAGAAAATTCCCTCGACGGCTGCGAAT 487200 Query 130154 GCAAAGAGACGCTCAGCAAAG 130174 |||| || | ||| | |||| Sbjct 487201 GCAACTAGCCTCTCCGAAAAG 487221 >seq506 Length=319592 Score = 100 bits (110), Expect = 4e-16 Identities = 407/634 (64%), Gaps = 18/634 (3%) Strand=Plus/Minus Query 118192 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 118251 ||||||| ||||| ||||| || ||||| |||| || ||| || || || || |||| Sbjct 219868 TCGTGTAGGGCTCGAAGCATTCGTTGTTGCCCAGAATCTGGCTAGTCGACGCAGTAGGCA 219809 Query 118252 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTC--CTTGAGAGC 118309 | || |||| || || ||| | | ||| | || || | ||| ||||||| Sbjct 219808 TAGGAGCCAGCAGGAGCGAGTTCCTCAAACCATATTGGGCAA--CCTTCGCCTTGAGACT 219751 Query 118310 GTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTG 118369 |||| || || | ||| | | ||||||||| ||||||| | || || Sbjct 219750 CGCCCAATCCCAGAGGTCTGTTGGCGTGACACCCCACATATCGTACTGGAGCTTGCCCTG 219691 Query 118370 GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCT 118429 ||||| || |||| | ||||| || ||||||| ||| |||| ||| |||| Sbjct 219690 CGACGCCGGGCTGCCCTGGTACGTCTCGTACGGGCCCTGCTCCTTGGCCATCTCGCAGCT 219631 Query 118430 CGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCA--TTGCCTTGGCC 118487 |||||||| || ||||| || || || || || || | |||| || | | ||| Sbjct 219630 CGCCTCGACTGCAGCGTGGTAGATGGTCTCGAAGATCTGCAGGTTCAGCTTACGT--GCC 219573 Query 118488 TCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCG 118547 ||| | || || || | || || | || || | |||||||| || || |||||| Sbjct 219572 TCGACCGAGTCGAATGGCAGCCGCAGCGCCATGAACGCGTCCGCGAGGCCCTGCACACCG 219513 Query 118548 AGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCA--CGGGATAAAAAT 118605 | |||||| || || || | ||| || || ||||| || || | |||| || | | Sbjct 219512 ATGCCAATCGGACGGTGGCGCATGTTCGAGTTCCGGGC-CTCAGGAATCGGG-TAGTAGT 219455 Query 118606 TCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTT 118665 || |||||| | | || || || | ||| ||||||| || || || ||| | | Sbjct 219454 TCGCATCGATGATGCGGTTCAGGTTGAACGCGACGACCTTTGCGACGTCGTGGAGCCTCT 219395 Query 118666 CGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGAT 118725 | | | | ||| | ||| || || || || || || || || || | Sbjct 219394 GGAAGTTGTACTTGCCACCCTC------GATGAACGACGGCAGCGCAATAGAAGCAAGGT 219341 Query 118726 TACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAAC 118785 | || || | ||||||||| | | |||||| || || |||||||||| ||| || Sbjct 219340 TGCAGACGGCGGTCTCATCGGGTGCGGAGTACTCGATGATCTCCGTGCACAGGTTAGAGG 219281 Query 118786 TCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 118819 ||| ||||| || | ||||| || || ||||| Sbjct 219280 ACTTGATGGTACCAAGGTTCTGCTGGTTGGACTT 219247 >seq62 Length=1243 Score = 96.9 bits (106), Expect = 4e-15 Identities = 222/332 (67%), Gaps = 2/332 (1%) Strand=Plus/Minus Query 11802 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTT-AGGGAATCCCCACAAAATGAGGA 11860 || || || ||| ||||||||||||| ||||| || ||| || || || | ||| Sbjct 670 TACCAGGCGTCTACCTCGGAGATGTTCGGTAAGGTCCAGGCGATTCCG-CAGATCGAGAG 612 Query 11861 GACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGT 11920 ||||| || ||||| || | ||| ||||| | ||| | || || ||| | Sbjct 611 CACGCCTTTTTATCCGCGCAGCCCCTACGGCGTGGCCAAGCTCTATGCCCACTGGATGAC 552 Query 11921 GAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGA 11980 | || ||||| || ||||| || |||| | | || ||||||||||||||||| Sbjct 551 CATCAACTACCGCGAGTCCTACGGCATCTTCGGCACCAGCGGCATTCTCTTCAACCACGA 492 Query 11981 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAAT 12040 || || | ||||||| || |||||||| ||||||||||| | ||| | || Sbjct 491 ATCCCCGCTGCGTGGCCGCGAGTTCGTGACCCGCAAGATCACCGACAGCATCGCCAAGAT 432 Query 12041 CGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGG 12100 | || ||| || ||| | | | |||| |||||| ||||| || | |||||||| Sbjct 431 CAAGGTGGGCAAGCTGGATGTGCTGCAGCTGGGCAACCTCGACGCCAAGCGCGACTGGGG 372 Query 12101 ACATGCCAAGGACTATGTTGAAGCCATGTGGC 12132 |||||||| || || || | ||||||| Sbjct 371 CTTCGCCAAGGAATACGTCGAGGGTATGTGGC 340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618425335958560