Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq993 122 1e-22 seq124 102 1e-16 >seq993 Length=568693 Score = 122 bits (134), Expect = 1e-22 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 94709 AGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTA 94768 |||| || || || ||||| | || | || || ||| | ||||| || ||||||||| Sbjct 489287 AGCACCTGTTCGACGCCATTGACACTATCCCCTGCATTAAGAAGAAGGCCGATTGGGCTC 489346 Query 94769 TGAAGTGGTTT---GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGT 94825 | ||| || || | || || || | ||||| ||||| ||| | || ||||| Sbjct 489347 TCCGCTGGATTTCGGACAAGAACTC-CG--CGTTTGCGGAGCGCCTCGTTGCTTTTGCAG 489403 Query 94826 GTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAG 94885 || ||||||||||||||||| || |||||| | |||| | |||||||||||||| | Sbjct 489404 CCGTCGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTG 489463 Query 94886 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||||| || ||| || || ||||| || ||||| || || ||||| Sbjct 489464 GTCTCATGCCCGGCCTCACGTTTTCGAACGAACTCATCTCCCGCGATGAGGG 489515 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 |||| | ||| | || | ||||| || || ||||| || |||||||| || ||||| Sbjct 487221 CTTTTCGGAGAGGCTAGTTGCATTCGCAGCCGTCGAGGGAATTTTCTTCTCCGGCTCCTT 487162 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 | | |||| | |||||||||||||| ||||||||||| || ||| || || ||||| Sbjct 487161 CGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTCACGTTTTCGAACGA 487102 Query 94917 GCTTATCTCTCGTGACGAGGG 94937 || ||||| || || ||||| Sbjct 487101 ACTCATCTCCCGCGATGAGGG 487081 >seq124 Length=125365 Score = 102 bits (112), Expect = 1e-16 Identities = 216/314 (69%), Gaps = 10/314 (3%) Strand=Plus/Minus Query 169201 ATCCGTCATGATCATGAGACGACCATACCG-AAGCT--CGGAAACATCTTGATAGTCCTT 169257 ||||||||| | ||||||||| || || || ||| | ||| | | | || || ||||| Sbjct 98088 ATCCGTCATAAGCATGAGACGGCCGTAACGCAAGGTGCCGGTATC--CGTG-TACTCCTT 98032 Query 169258 ACCCTGTTGAAGACCCAAGATCTTCTTGA-GATCGTTGAA-CTCTTGGTTTGATGTGAGC 169315 || || | |||| ||||||||||| | || |||| ||| | ||| ||| | Sbjct 98031 GTTGTGCTGCAAGCCCATGATCTTCTTGATGTTC--TGAATCTCCTCGTTCTTCATGATC 97974 Query 169316 TGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAG 169375 || | |||||||| || ||| |||| |||||||| |||||||||||| || Sbjct 97973 TGGTCGTGCTTCGCATCGCGCACGTTCAGCAACTTTCCACGAAGCGGGAAGACACCGAAG 97914 Query 169376 TGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCG 169435 | || ||||| ||||| |||||| || | ||||| | | | || || ||||| || Sbjct 97913 TTGTCGCGACCGACGACACCGAGACCAGCAATGGCGAGTGCCCTGGCGGAATCACCTTCC 97854 Query 169436 GTGACGATGAGCGTACATTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAAT 169495 || | ||||||||| || | || | || ||| ||||| ||||| || ||| || Sbjct 97853 GTCAAGATGAGCGTGCAGTCGCCGGCTTTCCTCGTTCCCGCGTTGTTGGCGTCAGACAGC 97794 Query 169496 TTGGGAATACCAGT 169509 |||| || ||||| Sbjct 97793 TTGGTCATGCCAGT 97780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583251496990240