Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq495 154 4e-32 seq1041 132 1e-25 >seq495 Length=337734 Score = 154 bits (170), Expect = 4e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | | ||||| || |||||||| ||||| || || || || | Sbjct 131126 TTTGCATGCCACCACGGAGACGAAGAACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGT 131185 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | || || ||||| || || || ||||| |||||||| | ||| ||||| | Sbjct 131186 AATCCGAAAGAGTGCGGCCATCCTCTAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGGT 131245 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || ||||||||||| || || || || || ||||| | || || | Sbjct 131246 CCGGGGGTATGCCCTCCTTATCCTGAATCTTCGCCTTCACGTTGTCAATTGTGTCCGAAG 131305 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||| || | || | ||||||||||| ||||| || || || |||||||| Sbjct 131306 ATTCAACCTCCAACGTGATCGTCTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 131360 Score = 150 bits (166), Expect = 5e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 || ||||| |||||||| || || || || || || || || || ||||| || ||||| Sbjct 131435 AGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTACGCCCGTCCTCAAGC 131494 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || ||||||||||| ||||| |||||||| || ||||| ||||| || ||||| ||| Sbjct 131495 TGCTTACCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCTTCCTTGTCCTGGATT 131554 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || || || || ||||| |||| || || | || || ||||| |||| ||||| ||| Sbjct 131555 TTGGCCTTGACGTTATCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATGGTCTTGCCG 131614 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || | || || || || |||||||| Sbjct 131615 GTCAACGTCTTCACGAAGATCTGCAT 131640 >seq1041 Length=164984 Score = 132 bits (146), Expect = 1e-25 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| |||||||||||||| || || |||||||| || || | || || ||||| || | Sbjct 54473 CAAGGTGAAGAGTAGACTCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCTCCA 54532 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || || || || || || || ||||| || || ||||| || || || ||||||| Sbjct 54533 GCTGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGAA 54592 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| ||||||| || || | || || || || || | ||||| | Sbjct 54593 TCTTCGCCTTGACATTGTCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTCC 54652 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || ||||||||||| Sbjct 54653 CAGTGAGGGTCTTGACGAAAATCTGCAT 54680 Score = 129 bits (142), Expect = 2e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || || || ||||| || || || || || || Sbjct 54678 CATACCACCACGAAGGCGGAGGACAAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTC 54737 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || || || || || || || || || ||||| || |||||||||||||| Sbjct 54738 AGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGATCAGG 54797 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || || || ||||| || || | ||||| | || Sbjct 54798 GGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCAGAGGACTC 54857 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || || |||||||| Sbjct 54858 GACCTCGAGCGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 54908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515229627484628