Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq62 149 7e-31 seq506 132 5e-26 seq993 129 6e-25 seq417 87.8 2e-12 >seq62 Length=1243 Score = 149 bits (164), Expect = 7e-31 Identities = 242/348 (70%), Gaps = 9/348 (3%) Strand=Plus/Plus Query 124553 CTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGC 124612 ||||| ||| ||||||| | | |||||| |||| ||| ||||||||||||||||| Sbjct 329 CTGCAGCATGCGCCACATACCCTCGACGTATTCCTTGGCGAAGCCCCAGTCGCGCTTGGC 388 Query 124613 ATCCAGGTTTCCGAGCTCGATTG------GCTTGGCCGTCTTGTTCCACTCCGCCAAACC 124666 || ||||| || |||| | ||||| || |||| || | || | | Sbjct 389 GTCGAGGTTGCCCAGCTGCAGCACATCCAGCTTGCCCACCTTGATC---TTGGCGATGCT 445 Query 124667 CAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAG 124726 || |||||||| ||||| |||||| || || || || ||||||||||| || Sbjct 446 GTCGGTGATCTTGCGGGTCACGAACTCGCGGCCACGCAGCGGGGATTCGTGGTTGAAGAG 505 Query 124727 AATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCC 124786 |||||| | | || || ||||| |||||||||||||| | |||||||| | | Sbjct 506 AATGCCGCTGGTGCCGAAGATGCCGTAGGACTCGCGGTAGTTGATGGTCATCCAGTGGGC 565 Query 124787 AAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGT 124846 | ||||||||| |||||| |||||||| || || || || || ||| | || | || | Sbjct 566 ATAGAGCTTGGCCACGCCGTAGGGGCTGCGCGGATAAAAAGGCGTGCTCTCGATCTGCGG 625 Query 124847 AGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAA 124894 | ||| | ||| || ||||||||||| ||| |||||| ||||| Sbjct 626 AATCGCCTGGACCTTACCGAACATCTCCGAGGTAGACGCCTGGTAGAA 673 Score = 125 bits (138), Expect = 8e-24 Identities = 228/329 (69%), Gaps = 15/329 (5%) Strand=Plus/Plus Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 || |||||| ||||||| |||||||||| |||| ||| ||||||||||||||||| Sbjct 330 TGCAGCATGCGCCACATACCCTCGACGTATTCCTTGGCGAAGCCCCAGTCGCGCTTGGCG 389 Query 159064 TCCATGTTCCCGAGCTCGATGACTTTTCCAGACTTT------TTCCACTCAGCCAGACCG 159117 || | ||| || |||| | || | |||| ||| || || || | | | Sbjct 390 TCGAGGTTGCCCAGCTGCAGCACAT--CCAG-CTTGCCCACCTTGATCTTGGCGATGCTG 446 Query 159118 AGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGA 159177 ||||||||||| ||||| ||||| || ||| | || || ||||| || ||| Sbjct 447 TCGGTGATCTTGCGGGTCACGAACTCGCGGCCACGCAGCGGGGATTCGTGGTTGAAGAGA 506 Query 159178 ATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCA 159237 |||||| | |||| | | |||||||||||||| || | || ||||||| || Sbjct 507 ATGCCGCTGGTGCCGAAGATGCCGTAGGACTCGCGGTAGTTGATGGTCATCCAGTGGGCA 566 Query 159238 AAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTC-ATTT--TGA 159294 ||||||||| |||||||| || || || |||||||| || || | ||| || | || Sbjct 567 TAGAGCTTGGCCACGCCGTAGGGGCTGCGCGGATAAAAAGGCGTGCTCTCGATCTGCGGA 626 Query 159295 ATTGGTTCCTGAACCTTTCCAAACATTTC 159323 || | |||| ||||| || ||||| || Sbjct 627 ATCG---CCTGGACCTTACCGAACATCTC 652 >seq506 Length=319592 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || ||||| ||||||||||| |||| | | |||||||| |||||| |||||||||| Sbjct 218719 GGCATCGTTCCTATGCTCCGTGTCTACGATTCGACGGCCCGTTACGTCGACCAGGGTGGC 218778 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 |||||| || | |||||||||||||| ||||| ||||| |||||| | | ||| Sbjct 218779 AACAAGCGCCCCGGTGCCTTCGCCATCTACCTAGAGCCTTGGCATGCCGACGTCTTCGAG 218838 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671 || ||||| || ||| ||| || ||| | || ||| | ||| |||||||| || Sbjct 218839 TTCCTCGATCTTCGTAAGAACCATGGTAAAGAGGAGGTTCGCGCTCGTGACCTCTTCTAT 218898 Query 53672 GCTCTGTGGATTCCGGACCTCTT 53694 || ||||||||||||| || || Sbjct 218899 GCATTGTGGATTCCGGATCTTTT 218921 Score = 114 bits (126), Expect = 1e-20 Identities = 185/265 (70%), Gaps = 6/265 (2%) Strand=Plus/Plus Query 53173 TGAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACAC 53232 |||| ||| ||| ||||| ||||||| ||||| | ||||| || || |||| | Sbjct 218352 TGAGCGGCCACAGCATCTTCTCATGCGTGTCGCTGTCGGTATTCATGGATCCGACATCGA 218411 Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 | ||| | ||||||||| || | ||| | ||||| ||||||||| | ||||| Sbjct 218412 CCATGTTCTTGAGACGTATAACCTGATGTCTGAGCGCTACTTCACGCACGCCTCACCAAC 218471 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATG---TCGAGCTGCTTCCTGGTGGCGAT 53349 || ||||||||||| || ||||||| ||| ||| || || || || || Sbjct 218472 GCTTTTCAACGCTGGCACCCCAAACCCTCAAATGAGCTCG---TGTTTTCTTGTCTGTAT 218528 Query 53350 GAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAA 53409 |||||| ||||| ||||| ||||||||| ||| |||||||| || || ||| || Sbjct 218529 GAAGGACGACTCTATCGAGGGCATCTACTCGACCCTCAAGGACTGCGCTATGATCAGTAA 218588 Query 53410 GTGGTCGGGTGGTATCGGTATCCAC 53434 | |||||||||| |||||| || Sbjct 218589 GACCGCGGGTGGTATTGGTATCAAC 218613 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 55730 AAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCT 55789 |||| ||| ||| ||| || |||||||| | ||||||| | | ||| | || Sbjct 220087 AAGGCGATCTACAAGACCGTCTGGGAGATCTCGCAGAAGAAGGTCCTCGACCTCGCGGCG 220146 Query 55790 GATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCA 55849 || || || |||| |||| |||||| ||||| || ||| | | || || || | Sbjct 220147 GACCGCGGCGCGTTCATCTGCCAGTCACAGTCCCTCAACGTGCACCTGCAGGCGCCGACT 220206 Query 55850 CTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATG 55909 ||| | |||| |||||||| ||||||||||||||||| || |||||||| ||| Sbjct 220207 ATGGGTCAATTGACGAGCATGCACTTCTACGGGTGGAAGAAGGGCCTGAAGACGGGCATG 220266 Query 55910 TACTATCTGCGGACCCGCGCC 55930 ||||| ||||| || ||| || Sbjct 220267 TACTACCTGCGTACGCGCCCC 220287 Score = 91.5 bits (100), Expect = 2e-13 Identities = 171/246 (70%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 55139 AACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAAC 55198 ||||||||||| ||||||| ||| |||||||||| | | ||| || || || ||| Sbjct 219430 AACCTGAACCGCATCATCGATGCGAACTACTACCCGATTCCTGAGGCCCGGAACTCGAAC 219489 Query 55199 CTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTC 55258 | || ||||| || || | ||||||||| |||||| | || ||| |||||| ||| Sbjct 219490 ATGCGCCACCGTCCGATTGGCATCGGTGTGCAGGGCCTCGCGGACGCGTTCATGGCGCTG 219549 Query 55259 GGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCAT 55317 | |||| |||||||||| || || | | |||| | | |||||| || | ||| Sbjct 219550 CGGCTGCCATTCGACTCGGTCGAGGCACGTAAGCTGAACCTGCAGATCTTCGAGAC-CAT 219608 Query 55318 CTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGG-CTATGAGCGAGGGGACCTACGAGA 55376 |||| || || |||||| | || | ||| | | |||| |||| | ||||||| Sbjct 219609 CTACCACGCTGCAGTCGAGGCGAGCTGCGAGATGGCCAAGGAGC-AGGGCCCGTACGAGA 219667 Query 55377 CGTTCC 55382 ||| || Sbjct 219668 CGTACC 219673 >seq993 Length=568693 Score = 129 bits (142), Expect = 6e-25 Identities = 345/518 (67%), Gaps = 22/518 (4%) Strand=Plus/Minus Query 74762 ATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCC 74821 |||| ||| ||||| | | || | ||| |||||||||| ||||| ||||| || || Sbjct 489522 ATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGTGAGGCCGGGCATGAGACC 489463 Query 74822 ACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACA 74881 ||||||||| | ||| ||||| | |||||| || ||||||||| || ||||| Sbjct 489462 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAAGAAGATACCCTCGACGGC 489403 Query 74882 CGCAAAGGCGACAAGGCGTTGCGCGAACG----GTGC--ATCGGAAGTCATCCAAGTCTG 74935 ||||| || || ||||| | ||| |||| || | || ||| ||||| | Sbjct 489402 TGCAAAAGCAACGAGGCGCTCCGCAAACGCGGAGTTCTTGTCCGAA---ATCCAGCGGAG 489346 Query 74936 AGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAG--GCT 74992 |||||| || || ||| | | | ||| |||| ||| || || || | ||| || ||| Sbjct 489345 AGCCCAATCGGC-CTTCTTCTTAATGCAGGGGATAGTGTCAATGGCGTCGAACAGGTGCT 489287 Query 74993 TGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATG 75052 || || | ||| ||||||| | |||| || | || ||||||||||| || || Sbjct 489286 CGC--GCTGCTGGGGGTCCTTGATGTAGGTGTCGATGAGGAGAGAGTACGTCTCGGAGTG 489229 Query 75053 AATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATC 75112 ||| ||| | | |||| | |||||||| | || ||||| || ||| || || Sbjct 489228 AATGTTCTCCATCATAATCTGGAAACCGTAGAAACAGCGAGCCTCCGCCGCCTGAACTTC 489169 Query 75113 CTTTGAAAA--ATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAA 75170 || || || ||| ||| |||||| |||| || ||||| || || || || || Sbjct 489168 GTTGGAGAACCGTTC--TACGAGATTCTCGTTGACAATACCGTCGGATGCTGCAAAGAAG 489111 Query 75171 GCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGA---GTTTGTCCCAATCCTTC 75227 || || || || || || ||||| |||||| ||| | |||| ||| || | Sbjct 489110 GCAAGGACGTGGGAAATGAAATGACGCTCGTCGTCATTGAGGCGGTTGTTCCAGTCATGG 489051 Query 75228 AGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 || ||| | | || |||||||| |||||||||| Sbjct 489050 AGATCCTTGGAAAGGTCCATCTCCTCTGCCGTCCAGAA 489013 >seq417 Length=374089 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 158944 AACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGT 159003 |||||||||| | ||||||||| || ||||| | ||| |||||||| || ||| Sbjct 349990 AACTCGCGGACGGGGTGCGTCTCGCCCGTCGCGAGCACGAAGTCCTCAGGGGACTCCTGC 349931 Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGC 159041 || ||||||||||||||| |||||||||| |||| ||| Sbjct 349930 TGCAGCATGAGCCACATGCCCTCGACGTAGTCCTTCGC 349893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547207271904800