Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq606 111 1e-19 seq495 95.1 8e-15 seq1041 93.3 3e-14 >seq606 Length=277477 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||||||||||| |||||||| || || ||||| || || ||||||| ||||| Sbjct 253500 TGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCGAGTTGC 253441 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || || ||||| || || ||||| | |||||||| || |||| || Sbjct 253440 TTGCCGGCGAAAATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTTATCCTGGATC-TT 253382 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| | || ||||| ||||||||| | || || || || || || Sbjct 253381 CGCCTTGACGTTGTCGATCGTGTCCGAAGACTCCACTTCAAGAGTGATAGTCTTGCCCGT 253322 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 ||||| || || || ||||||||| Sbjct 253321 CAACGTCTTAACGAAGATCTGCATG 253297 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | || | ||||| ||||| ||||| || || || || || || Sbjct 253807 CCGCCACGGAGACGGAGGACAAGGTGGAGGGTGCTTTCCTTCTGGATATTGTAGTCAGAG 253748 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| |||| || || || || || || || || | |||||||||||| || || Sbjct 253747 AGCGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCGGGAGGG 253688 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| || | || ||| || || ||||| | ||| || Sbjct 253687 ATGCCCTCCTTGTC-CTGAATCTTGGCCTTCACGTTATCGATCGTGTCCGAGGACTCGAC 253629 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || ||||| || || || | || || || || ||||||||| Sbjct 253628 TTCCAACGTGATCGTCTTGCCCGTGAGTGTCTTGACGAATATCTGCATG 253580 >seq495 Length=337734 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| ||||| || || || ||||| || || |||| || || || || ||||| || Sbjct 131677 CTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAA 131736 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 |||| ||||| ||||| ||||| | ||||||||||| |||| || | || || Sbjct 131737 GATTAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACAT 131795 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| ||||| ||||||||| | ||| ||||| || || || | || || | Sbjct 131796 TGTCAATCGTGTCCGACGACTCCACTTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGA 131855 Query 34694 CAAAAATCTGCATG 34707 |||| ||||||||| Sbjct 131856 CAAAGATCTGCATG 131869 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||||||||||| ||||||||||| || ||||| || || | || || | || Sbjct 130930 TGGAGCGTGCTCTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCATCCTCCAACTGC 130989 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | |||||| || || ||||| | |||||||| || |||| || Sbjct 130990 TTGCCGGCGAAAATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTTATCCTGGATC-TT 131048 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || || | ||| ||||| ||| ||||| | || || || || ||||| Sbjct 131049 CGCCTTGACATTGTCAATCGTGTCCGACGACTCGACTTCGAGCGTAATGGTCTTCCCGGT 131108 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 | || || |||||||| |||||| Sbjct 131109 AAGGGTCTTGACAAAAATTTGCATG 131133 >seq1041 Length=164984 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||||||| ||||| || ||||| ||||| ||||| || || | || ||||| || Sbjct 54986 TGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAAGCTGC 55045 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || || || || | |||||| ||||| || || | ||||||||||| |||| || Sbjct 55046 TTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATC-TT 55104 Query 34624 TGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| || ||| ||||| ||| || || | || || || || || || Sbjct 55105 TGCCTTGACGTTATCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCCGT 55164 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 | || ||||| || ||||||||| Sbjct 55165 GAGGGTCTTCACGAAGATCTGCATG 55189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314724705561308