Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq606 145 7e-30 seq1041 114 1e-20 seq495 109 5e-19 seq576 84.2 2e-11 >seq606 Length=277477 Score = 145 bits (160), Expect = 7e-30 Identities = 148/193 (77%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| |||||| |||| |||||||||||||| | || Sbjct 253297 CATGCAGATCTTCGTTAAGACGTTGACGGGCAAGACTATCACTCTTGAAGTGGAGTCTTC 253356 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | ||||| || || || || || || ||||| || |||||||| Sbjct 253357 GGACACGATCGACAACGTCAAGGCGAAGATCCAGGATAAGGAGGGCATTCCGCCCGATCA 253416 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| || || | ||||||||| ||| | |||||| || ||| ||||||| ||||| Sbjct 253417 GCAGCGCTTGATTTTCGCCGGCAAGCAACTCGAAGACGGTCGTACCCTTTCCGACTACAA 253476 Query 27167 CATTCAAAAGGAG 27179 |||||| |||||| Sbjct 253477 CATTCAGAAGGAG 253489 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| |||||| | || || || || || || ||||| Sbjct 253017 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACGCTCGAGGTCGAGTCGTCC 253076 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || ||||| || || || || || || || Sbjct 253077 GACACGATCGATAACGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAG 253136 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| || | || || || || | |||||||||||| Sbjct 253137 CAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGATGGTCGTACGCTCTCCGATTACAAC 253196 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 253197 ATCCAGAAGGAGTCGAC 253213 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || |||||||||||| || || || || || |||||| | || || | ||||| || | Sbjct 253577 CGGCATGCAGATATTCGTCAAGACACTCACGGGCAAGACGATCACGTTGGAAGTCGAGTC 253636 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| |||| || | || || || ||||| ||||| || ||||| || ||||| Sbjct 253637 CTCGGACACGATCGATAACGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGA 253696 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 ||||||||| | || | ||| ||||| || | || ||| | || | || || || Sbjct 253697 CCAACAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGGCGCACGCTCTCTGACTA 253756 Query 27164 CAACATTCAAAAGGA 27178 ||| || || ||||| Sbjct 253757 CAATATCCAGAAGGA 253771 >seq1041 Length=164984 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| | || |||||||| || || | || Sbjct 55189 CATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGTCTTC 55130 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| | ||||| ||| || || ||||| || ||||| || ||||| || Sbjct 55129 CGACACCATTGATAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCA 55070 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| || || || | || || || || ||||||||||||| Sbjct 55069 GCAGCGTCTTATCTTCGCGGGGAAGCAGCTTGAGGATGGTCGCACTCTTTCCGATTACAA 55010 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| || ||||| || || Sbjct 55009 CATCCAGAAGGAATCCAC 54992 >seq495 Length=337734 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||||||| | ||||| ||||| || || | ||| Sbjct 131640 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTTGAGGTCGAGTCTTCC 131581 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| ||||| || ||||| ||||| || || || ||||| Sbjct 131580 GACACGATCGATAACGTCAAGGCCAAAATCCAGGACAAGGAAGGTATTCCCCCGGATCAG 131521 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 |||||| | || | || || || || | || ||| | || |||| || || ||||| Sbjct 131520 CAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGAC-GGGCGTACGTTGTCGGACTACAA 131462 Query 27167 CATTCAAAAGGAGTCGACC 27185 ||| || |||||||| ||| Sbjct 131461 CATCCAGAAGGAGTCTACC 131443 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || ||||| ||| | || || | || || ||| | || Sbjct 131361 CATGCAGATCTTCGTCAAGACACTCACCGGAAAGACGATCACGTTGGAGGTTGAATCTTC 131302 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || || ||||| || || || |||||||| || || || Sbjct 131301 GGACACAATTGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGCATACCCCCGGACCA 131242 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | ||||| || || | || || | || |||| |||||||| Sbjct 131241 GCAGCGTTTGATCTTTGCCGGAAAGCAGCTAGAGGATGGCCGCACTCTTTCGGATTACAA 131182 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | || | ||| | ||| | || |||||||| Sbjct 131181 CATCCAGAAGGAGTCCACTCTTCACCTCGTTCTTCGTCTCCGTGGTGGCAT 131131 >seq576 Length=23070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||||||| | | | || || || || ||||| Sbjct 14835 ATGCAGATCTTTGTTAAGACCTTGACCGGCAAGACCGTCATGCTCGAGGTCGAGTCGTCC 14894 Query 27048 GACTCGATTGA-GATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || ||| ||||| || || || | ||| || || || || || || || Sbjct 14895 GACACGATCGATGAT-ATCAAAGCGAAGATCCAGGCCAAGGAGGGTATCCCTCCTGACCA 14953 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 | | | | |||| || || || || | || ||| || || | ||||||||||| Sbjct 14954 GCGGTGCCTGATATTTGCGGGAAAGCAGCTCGAGGACGGTCGTACGCTCTCCGATTACAA 15013 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| || ||||||||||| Sbjct 15014 CATCCAGAAGGAGTCGAC 15031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434911463051520