Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1266 104 2e-17 >seq1266 Length=139507 Score = 104 bits (114), Expect = 2e-17 Identities = 170/241 (71%), Gaps = 8/241 (3%) Strand=Plus/Plus Query 6853 CAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAA 6912 |||||| ||| | |||| |||| ||||||||| |||| || |||| ||| ||||| Sbjct 47691 CAGCTGATCCACGCCCTTCCCCGCATAGTCCGCATCGCAGTCCTCATACGGCGCTCCAAA 47750 Query 6913 GTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGG--AAC 6970 ||| | |||||| |||||||| || || || | ||||||||| | | ||||| | Sbjct 47751 GTGCCGCCACTGAAACCCGTATACGGGACCGAGGTCGCCCTCA--CGGCGATGGCCCAGT 47808 Query 6971 CCCCGCTTGTCCAGAAAGTC--TCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGG 7028 || ||| || || || | ||||| |||| ||||||||||||| | ||| | Sbjct 47809 CCGCGCGACTCGAGGAACGCCTTCGAG--CCGTTGCCGTCCCAGATCTTAATACCCTTCG 47866 Query 7029 ACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGC 7088 ||||||| ||| | || ||| || | ||||||||| || |||||||| || | || Sbjct 47867 CAGAGAGCTGCTTCGCGTCGGTGCAGCCGCGCACGAACCAGAGGAGCTCCTCAACTATGC 47926 Query 7089 C 7089 | Sbjct 47927 C 47927 Score = 104 bits (114), Expect = 2e-17 Identities = 170/241 (71%), Gaps = 8/241 (3%) Strand=Plus/Minus Query 34256 GGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCG 34315 ||| | || |||||||| || ||||||||| | || ||| || | ||| ||||||| Sbjct 47927 GGCATAGTTGAGGAGCTCCTCTGGTTCGTGCGCGGCTGCACCGACGCGAAGCAGCTCTCT 47868 Query 34316 TCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGA--GACTTTCTGGACAAGCGGG 34373 | ||| | ||||||||||||| |||| ||||| | || || || ||| | Sbjct 47867 GCGAAGGGTATTAAGATCTGGGACGGCAACGG--CTCGAAGGCGTTCCTCGAGTCGCGCG 47810 Query 34374 GGTT--CCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACA 34431 | | ||||| | | ||||||||| | || || || |||||||| |||||| | || Sbjct 47809 GACTGGGCCATCGCCG--TGAGGGCGACCTCGGTCCCGTATACGGGTTTCAGTGGCGGCA 47752 Query 34432 CTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT 34491 |||||| ||| |||| || |||| ||||||||| |||| |||| | ||| ||||| Sbjct 47751 CTTTGGAGCGCCGTATGAGGACTGCGATGCGGACTATGCGGGGAAGGGCGTGGATCAGCT 47692 Query 34492 G 34492 | Sbjct 47691 G 47691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448255250214720