Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq606 104 2e-17 seq495 98.7 9e-16 seq1041 93.3 4e-14 seq576 84.2 2e-11 >seq606 Length=277477 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||||||||| || || || || || |||| ||| || || |||| || || || Sbjct 253500 TGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCGAGTTGC 253441 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || | |||||||| |||| || | || ||| || ||| ||| ||| Sbjct 253440 TTGCCGGCGAAAATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTTATCCTGGATCTTC 253381 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | ||| || |||||||| || | |||||| | || ||||| Sbjct 253380 GCCTTGA-CGTTGTCGATCGTGTCCGAAGACTCCACTTCAAGAGTGATAGTCTTGCCCGT 253322 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || ||| ||||| ||||| ||||| Sbjct 253321 CAACGTCTTAACGAAGATCTGCAT 253298 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || || || ||||||| || || || | || || ||||| Sbjct 253219 TGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGCTGC 253160 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||||||||| || || ||||||||||| | || | | ||| |||||| ||| ||| Sbjct 253159 TTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTC 253100 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | ||| ||| |||||| || || | |||||| | || || ||| Sbjct 253099 GCCTTGACGTTATCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTC 253040 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 | || || |||||||| ||||| Sbjct 253039 AAGGTCTTGACAAAGATCTGCAT 253017 >seq495 Length=337734 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || ||||| || |||| ||| || || |||| || ||||| ||||| || || Sbjct 131677 CTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAA 131736 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||||| || | || ||| |||||| ||| || |||| | Sbjct 131737 GATTAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 131796 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | ||| || ||||||||| || | ||||| | || ||||| || || || || Sbjct 131797 GTCAATCGTGTCCGACGACTCCACTTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGAC 131856 Query 39273 AAAGATTTGCAT 39284 |||||| ||||| Sbjct 131857 AAAGATCTGCAT 131868 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||||||||| || || || ||||| || | ||| || || | || || | ||| Sbjct 130930 TGGAGCGTGCTCTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCATCCTCCAACTGC 130989 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || ||||||||||| |||| || | | ||| || ||| ||| ||| Sbjct 130990 TTGCCGGCGAAAATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTTATCCTGGATCTTC 131049 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | ||| || |||||| || || | ||| || | || || || Sbjct 131050 GCCTTGACATTGTCAATCGTGTCCGACGACTCGACTTCGAGCGTAATGGTCTTCCCGGTA 131109 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 || || || ||||| |||||||| Sbjct 131110 AGGGTCTTGACAAAAATTTGCAT 131132 >seq1041 Length=164984 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || || ||||||| ||| || || | || |||||||| || ||||| || Sbjct 54998 TCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAAGCTGCTTCCCCGCGAAG 55057 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 ||||||||||||||||||| || | || ||| |||||| ||| || |||| | Sbjct 55058 ATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTA 55117 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | || ||| ||||| || || | ||||| | || ||||| || || || || Sbjct 55118 TCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTCACG 55177 Query 39274 AAGATTTGCAT 39284 ||||| ||||| Sbjct 55178 AAGATCTGCAT 55188 >seq576 Length=23070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || ||||||| || || || |||| || ||||| || |||||||| Sbjct 15026 CTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCGTCCTCGAGCTGCTTTCCCGCAAA 14967 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAG--C 39210 ||| || | | ||||||| | || | | ||| ||| || ||| ||| ||||| | Sbjct 14966 TATCAGGCACCGCTGGTCAGGAGGGATACCCTCCTTGGCCTGGATCTTCGCTTTGATATC 14907 Query 39211 GTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 ||| | ||| ||| |||||| || || | | ||| | || || |||| || ||| Sbjct 14906 ATCG--ATCGTGTCGGACGACTCGACCTCGAGCATGACGGTCTTGCCGGTCAAGGTCTTA 14849 Query 39271 ACAAAGATTTGCAT 39284 |||||||| ||||| Sbjct 14848 ACAAAGATCTGCAT 14835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429538920028988