Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1041 159 8e-34 seq606 152 1e-31 seq495 136 9e-27 seq936 98.7 2e-15 seq478 96.9 8e-15 >seq1041 Length=164984 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 ||||||||||||||||| || |||| |||||||||| | ||| | ||||| || ||| Sbjct 54983 AGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAAGC 55042 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 |||||||| ||||||||||| || || |||||||| ||||| || |||||||| |||||| Sbjct 55043 TGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATC 55102 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 ||| ||| || || |||||||| || | || || || | ||||| ||||||||| Sbjct 55103 TTTGCCTTGACGTTATCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCC 55162 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 || | || || | ||| | ||||| Sbjct 55163 GTGAGGGTCTTCACGAAGATCTGCAT 55188 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||||||||| || || || || || |||| ||||| || | || || Sbjct 54687 ACGAAGGCGGAGGACAAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCAGACAGCGT 54746 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || ||||| || || || ||||| || Sbjct 54747 GCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGATCAGGGGGAATGCC 54806 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||||| ||||||||||| |||| || || || | Sbjct 54807 CTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCAGAGGACTCGACCTCGAG 54866 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||||||| |||| ||| || | ||| | ||||| Sbjct 54867 CGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 54908 Score = 141 bits (156), Expect = 2e-28 Identities = 156/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||||||| ||||| || || || |||| ||| || |||| || ||| | ||||| || | Sbjct 54473 CAAGGTGAAGAGTAGACTCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCTCCA 54532 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| || ||||| ||||| || || ||||||||||||||||| |||||||| || | Sbjct 54533 GCTGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGAA 54592 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| ||| || || ||||| || | || || || | |||||||||||| | Sbjct 54593 TCTTCGCCTTGACATTGTCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTCC 54652 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || | || || | ||| | ||||| Sbjct 54653 CAGTGAGGGTCTTGACGAAAATCTGCAT 54680 >seq606 Length=277477 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| ||| ||| || |||| |||||| || | | || | ||| || Sbjct 253792 AGGACAAGGTGGAGGGTGCTTTCCTTCTGGATATTGTAGTCAGAGAGCGTGCGCCCGTCC 253733 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || ||||||||||| || || || |||||||| Sbjct 253732 TCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCC 253673 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| ||||| ||||| |||| || || || |||||||||||| Sbjct 253672 TGAATCTTGGCCTTCACGTTATCGATCGTGTCCGAGGACTCGACTTCCAACGTGATCGTC 253613 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | ||| | ||||| Sbjct 253612 TTGCCCGTGAGTGTCTTGACGAATATCTGCAT 253581 Score = 114 bits (126), Expect = 3e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 |||||||||| ||| || || || | ||||| |||| | || | || ||||| | Sbjct 253505 CAAGGTGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCGA 253446 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 | ||||| || ||||| || | || || || ||||||||||| || ||||| || |||| Sbjct 253445 GTTGCTTGCCGGCGAAAATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTTATCCTGGA 253386 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| || ||||| ||||| || | ||||| || | ||||| ||||||| Sbjct 253385 TCTTCGCCTTGACGTTGTCGATCGTGTCCGAAGACTCCACTTCAAGAGTGATAGTCTTGC 253326 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||| || || | ||| | ||||| Sbjct 253325 CCGTCAACGTCTTAACGAAGATCTGCAT 253298 >seq495 Length=337734 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || || || || || || | |||||| |||| | ||| | || || Sbjct 131657 AGGACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCC 131716 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||||||||| || || |||||||| Sbjct 131717 TCGAGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 131776 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || || ||||| || | ||||| || | ||||||||| Sbjct 131777 TGGATCTTGGCCTTGACATTGTCAATCGTGTCCGACGACTCCACTTCGAGGGTGATCGTC 131836 Query 225682 TTGCCCGT 225689 |||||||| Sbjct 131837 TTGCCCGT 131844 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 ||||| || || || || || |||| ||||| || | ||| || | ||| || || ||| Sbjct 131435 AGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTACGCCCGTCCTCAAGC 131494 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| ||||| |||||||| || || || || || ||||||||||||||||| ||||| Sbjct 131495 TGCTTACCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCTTCCTTGTCCTGGATT 131554 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| || ||||| ||||| || | || || || | || || |||||||| Sbjct 131555 TTGGCCTTGACGTTATCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATGGTCTTGCCG 131614 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | ||| | ||||| Sbjct 131615 GTCAACGTCTTCACGAAGATCTGCAT 131640 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| |||||||| || || |||| |||||||| | | ||| | ||||| Sbjct 131149 AGAACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCC 131208 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||||||||| || || ||||| | || || ||||| || || || || ||||| || Sbjct 131209 TCTAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCCGGGGGTATGCCCTCCTTATCC 131268 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| || || ||||| || | ||| || || |||||||||||| Sbjct 131269 TGAATCTTCGCCTTCACGTTGTCAATTGTGTCCGAAGATTCAACCTCCAACGTGATCGTC 131328 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | ||| | ||||| Sbjct 131329 TTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 131360 >seq936 Length=2523 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/126 (78%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| || ||||||||||||| ||||||||||| | | | | Sbjct 837 GGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCC 896 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG-AATATTTACGCG 7855 ||||| || |||||||||||||||||||| |||| | | |||| || | || | ||| Sbjct 897 CGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGTCAACTTAATGCG 956 Query 7856 TTAGCT 7861 |||||| Sbjct 957 TTAGCT 962 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| |||||||| |||| ||| ||||| | |||| ||| | || ||| | ||||| Sbjct 1526 TGAGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCA-GACTCCTACGGGAGGCAG 1468 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| ||||||| |||||||||||||||| ||||| || Sbjct 1467 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAG 1428 >seq478 Length=55903 Score = 96.9 bits (106), Expect = 8e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAA-CCAGGTACTCTCATATTAAATATCGTAGTAATAAA 371423 || ||||||||||| | || | | ||| | ||||||||| |||| || |||||||| Sbjct 32500 AAAGGTAATTTATGTA-AGCTCATTCCATTTGTTCTCATATTTAATACTGTTGTAATAAA 32442 Query 371424 GTTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATC 371483 |||||| || |||| | |||||||| ||||| | |||||||| || ||||||||||| Sbjct 32441 GTTTATTGCTCCTAATAAAGAAGATACCCCTGCTAAGTGTAAACTGAAGATTGCTAAATC 32382 Query 371484 GACGGAACCGCCGGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGT 371543 || || | || ||||| | | || ||| || || |||||||| || || || Sbjct 32381 TACAGATGCACCTGAGTGTGATTGGATTCCGGCTAATGGTGGATAAACTGTCCATCCTGT 32322 Query 371544 TC 371545 || Sbjct 32321 TC 32320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192511703605544