Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_031024.1 Length=162308 Score E Sequences producing significant alignments: (Bits) Value seq79 129 6e-25 >seq79 Length=1228 Score = 129 bits (142), Expect = 6e-25 Identities = 208/293 (71%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 48183 AGCAACAGCTTACACTGCACATCCATCGGAGAACGGCGGTACTTATGGTGGACGAGTACT 48242 ||||||||||||||| ||| ||||| || || || || || | | |||| Sbjct 484 AGCAACAGCTTACACAGCAGATCCACTTGAAAATGGTTATAAAGCAGGCGACCAAGTAAA 425 Query 48243 AACAGCAACTGGATTCGACTTAACAGCAAATCCATCAGCTAAGATTATCGCAGTTGACCC 48302 | |||| || | |||||||||| |||||| || | || |||||||| || Sbjct 424 ATCAGCTTTAGGCCACAACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTTGATCC 365 Query 48303 ACGAGTAATTCCACTAGGTTCTAAGGTGCACGTAGAGGGATATGGAACAGCAATTGCTAG 48362 | | || |||||| ||||||| || || || || || || ||| |||||||||| | Sbjct 364 AAGTGTCATTCCATTAGGTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATTGCTGG 305 Query 48363 CGATACTGGTGGAGCGATTAAAGGTAATAGAATTGATGTGCTAATGCC--ATCAGCCTCT 48420 |||||||||||||| |||||||| |||| ||||||||| ||||||| || | | | Sbjct 304 TGATACTGGTGGAGCTATTAAAGGAAATAAAATTGATGTTTTAATGCCAGATAAAGGT-T 246 Query 48421 CAGTCTAATAACTGGGG-TGTACGAACAGTTAAAGTAACAATCTTAAACTAGT 48472 || || | || |||||| ||| |||||||| ||| | | | |||||||||| Sbjct 245 CA-TCAAGTAGCTGGGGACGTA-AAACAGTTACAGTTAAAGTATTAAACTAGT 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519249317841280