Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq993 140 5e-28 seq546 89.7 7e-13 >seq993 Length=568693 Score = 140 bits (154), Expect = 5e-28 Identities = 347/519 (67%), Gaps = 12/519 (2%) Strand=Plus/Plus Query 48182 TTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGC 48241 |||||| ||||| ||||| |||||||| || ||||| || |||||||| || || | || Sbjct 487101 TTCGTTCGAAAACGTGAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGC 487160 Query 48242 GAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA 48301 ||| || || || ||||| || || || ||||| || ||||| || ||||| || | Sbjct 487161 GAAGGAGCCGGAGAAGAAAATTCCCTCGACGGCTGCGAATGCAACTAGCCTCTC--CGAA 487218 Query 48302 A---CTGGCTTCGT-TGTG-TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAA 48356 | | | ||| | || |||||| ||| ||||| |||||||||||||| | ||| Sbjct 487219 AAGACAGAATTCTCGTCTGCTATCCAGCGTAACGCCCAGTCAGCCTTCTTCTTGATGCAA 487278 Query 48357 GGCATTGTTTCTATAGCATTAAAGA-GAAAGtttttttCATTGCTATCTTTAACGTAAGT 48415 || ||||| |||||||| | |||| |||||| | | | || || | ||| || Sbjct 487279 GGTATTGTCTCTATAGCGTCGAAGAGGAAAGTGCGCTCGACAG-GGTCCTTGATGTATGT 487337 Query 48416 ATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTA 48475 || || | || ||| | || || || | ||||||||| ||||| || ||||| Sbjct 487338 GTCGATGAGGAGGGAGTACGTCTCTGAATGCACATTTTCAATCATGATCTGGAAGCCGTA 487397 Query 48476 AAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATT 48535 || || | || || | ||| ||||| | | || || || | | |||||| || Sbjct 487398 GAAGCAGCGGGCCTCAGCCGCCTGGACCTCATTGGAGAACCGCTCGACGAGATTCTCGTT 487457 Query 48536 TACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTT 48595 || || || || ||| || || || || | |||| | | |||| | ||||| Sbjct 487458 GACAATGCCGTCCGAAGCGGCGAAGAAGGCAAGCACATATGAGAGGAAATGTCGCTCGTT 487517 Query 48596 GGAAGTCAGTTT---ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGT 48652 || || || || |||||| || | ||| | || | || | |||||| |||| Sbjct 487518 GGGCGTGAGCTTGCCATTCCAATCCCAAAGATCATGCGAGAGGTCAATTTCTTCTACTGT 487577 Query 48653 CCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 ||| ||||| || | ||||| || ||||| | ||| || Sbjct 487578 CCAGAATGACGCTTGTGCTTGCTTGTACATCTGCCAGAT 487616 >seq546 Length=28548 Score = 89.7 bits (98), Expect = 7e-13 Identities = 112/153 (73%), Gaps = 7/153 (5%) Strand=Plus/Minus Query 48197 GAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAA 48256 |||||||||||||| ||| | | ||||| ||||| || ||||||||| ||| || Sbjct 9241 GAGACCGGGCATTAATCCTCTGCTACGAAGCCAGAATATCGCAGCGAAAGATGAAGAGAA 9182 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTG 48316 ||| ||||||||||||||||| || ||| |||| | | | || || |||| ||||| Sbjct 9181 GAAGATGCCTTCTACGGCCGCGAACGCGATAAGGCGCACAGCGAAA--GGCTGAGTTGTA 9124 Query 48317 T-----ATCCACCGTTGTGCCCAATCAGCCTTC 48344 | ||||| ||| ||||| ||||| ||| Sbjct 9123 TCTTCGATCCATCGTAACGCCCATTCAGCTTTC 9091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694657720032640