Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq993 154 2e-32 >seq993 Length=568693 Score = 154 bits (170), Expect = 2e-32 Identities = 374/561 (67%), Gaps = 14/561 (2%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| || ||| | ||| ||||| | || | |||||| ||||| ||||| Sbjct 487060 CAGGCAAAGTCGGTATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGTGAGG 487119 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 || ||||| || |||||||| |||||||| || |||| ||||| || || || ||||| Sbjct 487120 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAAGAAA 487179 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA--- 46806 || || || || || |||||||| || || ||||| || || | || ||| | Sbjct 487180 ATTCCCTCGACGGCTGCGAATGCAACTAGCCTCTC--CGAAAA-GACAGAATTCTCGTCT 487236 Query 46807 ---ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 ||||| | | ||||| |||||||| ||||| | ||||| ||||| |||||||| Sbjct 487237 GCTATCCAGCGTAACGCCCAGTCAGCCTTCTTCTTGATGCAAGGTATTGTCTCTATAGCG 487296 Query 46864 TTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATAC 46923 | ||||| || | || || || || | ||||| || || | || ||| Sbjct 487297 TCGAAGAGGAAAGTGCGCTCGACAGGGTCCTTGATGTATGTGTCGATGAGGAGGGAGTAC 487356 Query 46924 ATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 46983 | |||||||| | |||||||| ||||| || ||||| || || | || |||| Sbjct 487357 GTCTCTGAATGCACATTTTCAATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCAGCC 487416 Query 46984 ATCTGTACCTCTGTACAAAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACTAGC 47042 ||| ||||| | | || || || ||| | |||||| || || || || || ||| Sbjct 487417 GCCTGGACCTCATTGGAGAACCGCTC-GACGAGATTCTCGTTGACAATGCCGTCCGAAGC 487475 Query 47043 AGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTT---ATT 47099 || || || || | |||| | | |||| | || | || || || || ||| Sbjct 487476 GGCGAAGAAGGCAAGCACATATGAGAGGAAATGTCGCTCGTTGGGCGTGAGCTTGCCATT 487535 Query 47100 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 ||| || | ||| | || | || | |||||| |||||||||||||||| | ||| Sbjct 487536 CCAATCCCAAAGATCATGCGAGAGGTCAATTTCTTCTACTGTCCAGAATGACGCTTGTGC 487595 Query 47160 TTTTTTATACATATTCCATAT 47180 || || ||||| | ||| || Sbjct 487596 TTGCTTGTACATCTGCCAGAT 487616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712923028696320