Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq606 187 5e-42 seq1041 181 2e-40 seq495 179 8e-40 seq576 129 1e-24 seq428 95.1 3e-14 >seq606 Length=277477 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || || || | |||||||| || ||||| |||||||||| Sbjct 253808 ACCGCCACGGAGACGGAGGACAAGGTGGAGGGTGCTTTCCTTCTGGATATTGTAGTCAGA 253749 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||| || ||||| || || || || || ||||| | ||| |||||||| || Sbjct 253748 GAGCGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCGGGAGG 253689 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| || || ||| ||||||| |||||||| | ||||| Sbjct 253688 GATGCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTATCGATCGTGTCCGAGGACTCGAC 253629 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||||||||||| ||||| | ||||| |||||||||||||| Sbjct 253628 TTCCAACGTGATCGTCTTGCCCGTGAGTGTCTTGACGAATATCTGCAT 253581 Score = 181 bits (200), Expect = 2e-40 Identities = 168/212 (79%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 282889 GTACCA-GATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947 |||||| | || | |||||| || || || ||||||||||| | ||| || || || || Sbjct 253509 GTACCAAGGTGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCT 253450 Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007 || ||||| || ||||| || ||||| || || || || |||||| |||||||| || Sbjct 253449 TCGAGTTGCTTGCCGGCGAAAATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTTATCC 253390 Query 283008 TGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTC 283067 |||||||| || || ||| | ||||| |||||||||| || ||||| |||||||| ||| Sbjct 253389 TGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGAAGACTCCACTTCAAGAGTGATAGTC 253330 Query 283068 TTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||||||||| |||||||| Sbjct 253329 TTGCCCGTCAACGTCTTAACGAAGATCTGCAT 253298 Score = 159 bits (176), Expect = 7e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||||||||| || | ||||| || |||||||| || || || || |||||| Sbjct 253207 TCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGCTGCTTGCCCGCAAAG 253148 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| || || ||||| || |||||||||||||| |||||||| || || ||| || Sbjct 253147 ATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTA 253088 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | ||||| ||||| ||||| ||||| || ||||| ||||| || Sbjct 253087 TCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAAGGTCTTGACA 253028 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 253027 AAGATCTGCAT 253017 >seq1041 Length=164984 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| || || |||||||||||||||| Sbjct 54681 ACCACCACGAAGGCGGAGGACAAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCAGA 54740 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || || || ||||| | ||||| || ||| || Sbjct 54741 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGATCAGGGGG 54800 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| || || || | ||||| ||||| || | ||||| Sbjct 54801 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCAGAGGACTCGAC 54860 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || |||| |||||| ||||| |||||||| Sbjct 54861 CTCGAGCGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 54908 Score = 170 bits (188), Expect = 4e-37 Identities = 153/192 (80%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || ||||||||||| || | ||| ||||| |||||||| || || ||||| || || Sbjct 54997 TTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAAGCTGCTTCCCCGCGAA 55056 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| | ||| || ||||| ||||| ||||||||||| ||||||||||| || ||| | Sbjct 55057 GATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTT 55116 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||| || ||||| |||| ||||| || |||||||| ||||| ||||| | ||||| || Sbjct 55117 ATCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTCAC 55176 Query 283088 GAATATCTGCAT 283099 ||| |||||||| Sbjct 55177 GAAGATCTGCAT 55188 Score = 138 bits (152), Expect = 2e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| || ||||| | || || || |||||||| || || || || || || Sbjct 54490 TCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCTCCAGCTGCTTGCCCGCGAAA 54549 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || || ||||| |||||||||||||||||| || ||||| || || || | Sbjct 54550 ATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTG 54609 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || |||||||||| ||||| ||||| ||||||||||| || || | ||||| ||| Sbjct 54610 TCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTCCCAGTGAGGGTCTTGACG 54669 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 54670 AAAATCTGCAT 54680 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || ||| | ||||| ||||| |||| || || ||| Sbjct 55377 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCAACCTCG 55436 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| || || | ||||||||||| |||||||| Sbjct 55437 AGGGTGATGGTCTTTCCGGTGAGGGTCTTAACGAAGATCTGCAT 55480 >seq495 Length=337734 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || || || | ||| || || ||||||||||| || | | Sbjct 131134 CCACCACGGAGACGAAGAACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAA 131193 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||||||||| || || ||||||||||||||||| || ||||| || Sbjct 131194 AGAGTGCGGCCATCCTCTAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCCGGGGGT 131253 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || || ||||| || || ||| | || || |||||||||| ||| || Sbjct 131254 ATGCCCTCCTTATCCTGAATCTTCGCCTTCACGTTGTCAATTGTGTCCGAAGATTCAACC 131313 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||| || || | ||||| ||||| |||||||| Sbjct 131314 TCCAACGTGATCGTCTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 131360 Score = 147 bits (162), Expect = 5e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | | ||| || || ||||| || || || || |||||| Sbjct 131450 TCCTTCTGGATGTTGTAGTCCGACAACGTACGCCCGTCCTCAAGCTGCTTACCAGCAAAG 131509 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| || || || |||||||| |||||||| ||||| || || || ||| || Sbjct 131510 ATAAGACGCTGCTGATCCGGGGGAATACCTTCCTTGTCCTGGATTTTGGCCTTGACGTTA 131569 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| |||| ||||| || || || || ||||| || ||||| ||||| ||| Sbjct 131570 TCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATGGTCTTGCCGGTCAACGTCTTCACG 131629 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 131630 AAGATCTGCAT 131640 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || ||||| ||||| || || || | || || || || || |||||||| | Sbjct 131641 ACCGCCGCGCAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGA 131700 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || || ||||| || || || ||||| ||||| | || || ||||| ||| Sbjct 131701 AAGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGGTCGGGCGG 131760 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || || | || || |||||||| | || || Sbjct 131761 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATCGTGTCCGACGACTCCAC 131820 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||| ||||||||||| ||||| | ||||| || || |||||||| Sbjct 131821 TTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 131868 Score = 138 bits (152), Expect = 2e-27 Identities = 158/211 (75%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 282890 TACCA-GATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCT 282948 ||||| | || | |||||| || || || ||||| ||||||| ||| ||||||||||||| Sbjct 130922 TACCAAGGTGGAGCGTGCTCTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCATCCT 130981 Query 282949 CTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTT 283008 | | || || ||||| || || | ||| || || || ||| || |||||||| || | Sbjct 130982 CCAACTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTTATCCT 131041 Query 283009 GGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCT 283068 ||||||| || || || | || || |||||||| | ||||||||||| || || |||| Sbjct 131042 GGATCTTCGCCTTGACATTGTCAATCGTGTCCGACGACTCGACTTCGAGCGTAATGGTCT 131101 Query 283069 TACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || | ||||| || || || ||||| Sbjct 131102 TCCCGGTAAGGGTCTTGACAAAAATTTGCAT 131132 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || ||| | ||||| ||||| || | ||||| || Sbjct 132047 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGACCTCA 132106 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||||||||| || || | ||||| ||||| |||||||| Sbjct 132107 AGAGTGATCGTCTTTCCAGTGAGGGTCTTCACGAAAATCTGCAT 132150 >seq576 Length=23070 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||||||||| || | ||||| || || ||||| || || || || ||||| Sbjct 15025 TCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCGTCCTCGAGCTGCTTTCCCGCAAAT 14966 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| | | |||||| || |||||||||||| | |||||||| ||||| | | Sbjct 14965 ATCAGGCACCGCTGGTCAGGAGGGATACCCTCCTTGGCCTGGATCTTCGCTTTGATATCA 14906 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | ||||| ||||| ||| ||||| || ||||| |||||||| Sbjct 14905 TCGATCGTGTCGGACGACTCGACCTCGAGCATGACGGTCTTGCCGGTCAAGGTCTTAACA 14846 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 14845 AAGATCTGCAT 14835 >seq428 Length=363050 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || || | ||||| |||||||| | || || ||| Sbjct 255320 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCG 255261 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| ||||| ||||| | ||||| ||||| ||||||||| Sbjct 255260 AGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATT 255216 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| Sbjct 255505 ACCACCACGCAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 255446 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| Sbjct 255445 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 255392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046722087122504