Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq495 163 2e-35 seq1041 143 2e-29 seq606 129 4e-25 seq576 105 5e-18 seq406 100 2e-16 >seq495 Length=337734 Score = 163 bits (180), Expect = 2e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| |||||| |||||||||||||| | || ||| | || || Sbjct 131152 ACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTCT 131211 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||||||||||||||| || | || | || ||||| ||| Sbjct 131212 AGCTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCCGGGGGTATGCCCTCCTTATCCTGA 131271 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | || ||||| | ||||| ||||||| ||| ||||||||| Sbjct 131272 ATCTTCGCCTTCACGTTGTCAATTGTGTCCGAAGATTCAACCTCCAACGTGATCGTCTTT 131331 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| ||||| |||||||| |||||| Sbjct 131332 CCGGTGAGTGTCTTGACGAAGATCTGCATG 131361 Score = 120 bits (132), Expect = 2e-22 Identities = 153/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 44132 AGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGC 44191 ||||| |||||||||||||| || ||||| || || | || ||| | || |||| | Sbjct 130927 AGGTGGAGCGTGCTCTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCATCCTCCAAC 130986 Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| ||||| || || | |||||||||||| | || | || ||||| ||| ||| Sbjct 130987 TGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTTATCCTGGATC 131046 Query 44252 TTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTC 44309 ||| ||| || ||| | || ||||| | || || || || | |||||| ||||| | Sbjct 131047 TTCGCCTTGACATTGT--CAATCGTGTCCGACGACTCGACTTCGAGCGTAATGGTCTTCC 131104 Query 44310 CCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || |||||||| || || ||||||||| Sbjct 131105 CGGTAAGGGTCTTGACAAAAATTTGCATG 131133 Score = 120 bits (132), Expect = 2e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 44132 AGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGC 44191 |||||||| || |||||| ||||||||||| || | | ||| |||| || ||| Sbjct 131435 AGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTACGCCCGTCCTCAAGC 131494 Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| || |||||||| | |||||||||||| | || | ||||||||| ||| || Sbjct 131495 TGCTTACCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCTTCCTTGTCCTGGATT 131554 Query 44252 TTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 || ||| | | | || ||||||| || || ||||| | ||||| ||||| || Sbjct 131555 TTGGCCTTGACGTTATCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATGGTCTTGCCG 131614 Query 44312 GTGAGGGTCTTCACGAAGATTTGCAT 44337 || | |||||||||||||| ||||| Sbjct 131615 GTCAACGTCTTCACGAAGATCTGCAT 131640 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| || || ||||| |||| || || |||| || Sbjct 131660 ACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCCTCG 131719 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | |||||||| || | || | || ||||| ||| Sbjct 131720 AGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 131779 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | || ||||| | || ||||| || | || ||||||| Sbjct 131780 ATCTTGGCCTTGACATTGT--CAATCGTGTCCGACGACTCCACTTCGAGGGTGATCGTCT 131837 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | |||||||||||||| || ||||| |||||| Sbjct 131838 TGCCCGTGAGGGTCTTGACAAAGATCTGCATG 131869 >seq1041 Length=164984 Score = 143 bits (158), Expect = 2e-29 Identities = 162/213 (76%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 44128 CACC-AGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGT 44186 |||| ||||| || ||| ||||| |||||||||||||||| || ||| | || | Sbjct 54978 CACCGAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCT 55037 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | ||||||||||| || ||||| | ||||||||| || | ||| | || ||||| ||| Sbjct 55038 CAAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCT 55097 Query 44247 TTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| | | ||| | |||||||||| || || ||||| | || || ||| Sbjct 55098 GGATCTT-TGCCTTGACGTTATCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTC 55156 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||||||||||||||||||||| |||||| Sbjct 55157 TTGCCCGTGAGGGTCTTCACGAAGATCTGCATG 55189 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| ||||| |||||| ||||||||||| || | || ||| |||| ||| Sbjct 54700 ACAAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCCTCC 54759 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | || |||||||| | || | || ||||| ||| Sbjct 54760 AGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGG 54819 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | |||||||| | ||| || ||||| | ||| || ||||| Sbjct 54820 ATCTTCGCCTTCACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGCGTGATGGTCTTG 54879 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| |||||||| ||||| Sbjct 54880 CCAGTCAGAGTCTTGACGAAGATCTGCAT 54908 Score = 109 bits (120), Expect = 4e-19 Identities = 154/213 (72%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 44128 CACCA-GGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGT 44186 ||||| ||||||| || |||||| ||||| || || |||| || || | || | Sbjct 54470 CACCAAGGTGAAGAGTAGACTCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCT 54529 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 |||||||||| || || || || | |||||||| || | || | ||| ||||| ||| Sbjct 54530 CCAGCTGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCT 54589 Query 44247 TTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 |||||| ||| || ||| | || ||||| | || || ||||| | ||| ||||| Sbjct 54590 GAATCTTCGCCTTGACATTGT--CAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGT 54647 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || ||||||||||| ||||| || ||||| Sbjct 54648 CTTCCCAGTGAGGGTCTTGACGAAAATCTGCAT 54680 >seq606 Length=277477 Score = 129 bits (142), Expect = 4e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 44132 AGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGC 44191 ||||| ||||| |||||| |||||||||||||||| ||| || | || || ||| Sbjct 253222 AGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGC 253163 Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| || |||||||||| |||||||| || | ||| | ||| ||||| ||| ||| Sbjct 253162 TGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATC 253103 Query 44252 TTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 ||| ||| | | | || ||||||| || || ||||| | ||| || ||||| || Sbjct 253102 TTCGCCTTGACGTTATCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCA 253043 Query 44312 GTGAGGGTCTTCACGAAGATTTGCAT 44337 || | |||||| || ||||| ||||| Sbjct 253042 GTCAAGGTCTTGACAAAGATCTGCAT 253017 Score = 122 bits (134), Expect = 6e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 44132 AGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGC 44191 ||||| |||||||||||||| || |||||||| |||| || || |||| || || Sbjct 253503 AGGTGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCGAGT 253444 Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| ||||| || ||||| ||||||||||| | || | || ||||| ||| ||| Sbjct 253443 TGCTTGCCGGCGAAAATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTTATCCTGGATC 253384 Query 44252 TTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 ||| ||| | | | || ||||| | || ||||| || | || || ||||| ||| Sbjct 253383 TTCGCCTTGACGTTGTCGATCGTGTCCGAAGACTCCACTTCAAGAGTGATAGTCTTGCCC 253324 Query 44312 GTGAGGGTCTTCACGAAGATTTGCATG 44338 || | ||||| |||||||| |||||| Sbjct 253323 GTCAACGTCTTAACGAAGATCTGCATG 253297 >seq576 Length=23070 Score = 105 bits (116), Expect = 5e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 44132 AGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGC 44191 ||||| || || ||||||| ||| |||||| | | ||| |||| |||| || ||| Sbjct 15321 AGGTGGAGGATGGTCTCCTTCCGGACGTTGTAGTTAGAGAGCGTGCGCCCGTCCTCGAGC 15262 Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| || | ||||| | |||||||||||| | ||| | | ||||| ||| ||| Sbjct 15261 TGCTTGCCCGTGAAGATGATACGCTGCTGATCGGGAGGGATGCACTCCTTGTCCTGAATC 15202 Query 44252 TTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 || ||||| | | || ||||| | ||| || || |||| |||||||||||| || Sbjct 15201 TTGGCCTTCACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAACGTAATCGTCTTGTCC 15142 Query 44312 GTGAGGGTCTTCACGAAGATTTGCAT 44337 || | |||| ||||||| ||||| Sbjct 15141 GTCAACGTCTGAACGAAGACCTGCAT 15116 Score = 100 bits (110), Expect = 2e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 44132 AGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGC 44191 ||||| || || |||||| |||||||||||||||| ||| || |||| || ||| Sbjct 15040 AGGTGGAGTGTCGACTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCGTCCTCGAGC 14981 Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| || ||||| |||| | | |||| || | ||| | ||| ||||| || ||| Sbjct 14980 TGCTTTCCCGCAAATATCAGGCACCGCTGGTCAGGAGGGATACCCTCCTTGGCCTGGATC 14921 Query 44252 TTCTGCTTCAATGT-TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCC 44310 ||| |||| || | | || ||||||| || || ||||| | | | | ||||| || Sbjct 14920 TTC-GCTTTGATATCATCGATCGTGTCGGACGACTCGACCTCGAGCATGACGGTCTTGCC 14862 Query 44311 CGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | |||||| || ||||| ||||| Sbjct 14861 GGTCAAGGTCTTAACAAAGATCTGCAT 14835 >seq406 Length=388386 Score = 100 bits (110), Expect = 2e-16 Identities = 156/224 (70%), Gaps = 13/224 (6%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || || ||||| |||||| || ||||||||||||| || ||| |||| || Sbjct 234846 CACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCGGAGACCGTGCGACCGTCCTC 234787 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCA------------CACC 44235 |||||||| | ||| ||||||| |||||||| | ||||||| |||| Sbjct 234786 GAGCTGCTTACTGGCGAAGATCAGGCGCTGCTGGCCGGAAGGCAACGGTAACCACTCACC 234727 Query 44236 T-TCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCA 44294 | ||||| ||| ||||| ||||| | | |||||||| | | |||||||| | Sbjct 234726 TCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAAGCCTCCACCTCGA 234667 Query 44295 CCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| |||| || ||||| ||||| |||||||| |||||| Sbjct 234666 GGATAACGGTCTGGCCGGTGAGTGTCTTGACGAAGATCTGCATG 234623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359984801699292