Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1041 159 8e-34 seq495 140 8e-28 seq606 132 1e-25 seq428 84.2 5e-11 >seq1041 Length=164984 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || ||||| || ||||| || || ||| Sbjct 55185 CAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGAC 55126 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||| |||||||| || || || ||||| |||||||| Sbjct 55125 ACCATTGATAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAG 55066 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||||| || ||||| | |||||| ||||||| ||| || Sbjct 55065 CGTCTTATCTTCGCGGGGAAGCAGCTTGAGGATGGTCGCACTCTTTCCGATTACAACATC 55006 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || ||||| || || || || Sbjct 55005 CAGAAGGAATCCACTCTCCACCT 54983 Score = 145 bits (160), Expect = 2e-29 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || |||||||| |||||||| || || ||| Sbjct 54677 CAGATTTTCGTCAAGACCCTCACTGGGAAGACGATCACGCTCGAGGTCGAGTCTTCGGAC 54618 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || || || || || |||||||| Sbjct 54617 ACGATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATTCCGCCCGACCAGCAG 54558 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| || || ||||| || ||||| ||||||| |||| ||||| || Sbjct 54557 CGCCTTATTTTCGCGGGCAAGCAGCTGGAGGATGGTCGGACTCTGTCCGACTATAATATC 54498 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 54497 CAGAAGGAGTCTACTCTTCACCTTG 54473 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || || || || ||||| |||||||| || ||| ||| Sbjct 54905 CAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACGCTCGAGGTCGAGTCCTCTGAC 54846 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || || || || || |||||| Sbjct 54845 ACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAGCAA 54786 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || || || | || || | || || ||| || Sbjct 54785 CGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCTGACTACAACATC 54726 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || ||||| ||||| ||||| Sbjct 54725 CAGAAGGAGTCAACGCTGCACCTTGT 54700 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| ||||| || |||||||||||||| || || ||| Sbjct 55477 CAGATCTTCGTTAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTTGAGTCTTCTGAC 55418 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| |||||||| ||||| |||||||| || || Sbjct 55417 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGG 55377 >seq495 Length=337734 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| ||||| |||||||| | ||||| ||| || ||| Sbjct 131357 CAGATCTTCGTCAAGACACTCACCGGAAAGACGATCACGTTGGAGGTTGAATCTTCGGAC 131298 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||||||||| || || || || || ||||||||||| Sbjct 131297 ACAATTGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGCATACCCCCGGACCAGCAG 131238 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| |||||||| ||||| || ||||| | |||||| | ||||| ||| || Sbjct 131237 CGTTTGATCTTTGCCGGAAAGCAGCTAGAGGATGGCCGCACTCTTTCGGATTACAACATC 131178 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || || ||| Sbjct 131177 CAGAAGGAGTCCACTCTTCACCTCGTT 131151 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || |||||||||||||| ||||| || ||| Sbjct 131865 CAGATCTTTGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAAGTGGAGTCGTCGGAC 131806 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 131805 ACGATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAG 131746 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | |||||| |||| || || | Sbjct 131745 CGCCTAATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACTCTTTCCGACTACAATATT 131686 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 131685 CAGAAGGAGTCTACCCTTCACCTTGT 131660 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| ||||| |||||||| || ||||| || ||| ||| Sbjct 132147 CAGATTTTCGTGAAGACCCTCACTGGAAAGACGATCACTCTTGAGGTCGAGTCCTCCGAC 132088 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| |||||||| ||||| |||||||| || || Sbjct 132087 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGG 132047 >seq606 Length=277477 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || ||||| |||||||| || || ||| Sbjct 253020 CAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACGCTCGAGGTCGAGTCGTCCGAC 253079 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || || ||||||||||||||||| Sbjct 253080 ACGATCGATAACGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAG 253139 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || |||||||| ||||| | || || ||||||| ||| || Sbjct 253140 CGCCTGATCTTTGCGGGCAAGCAGCTCGAGGATGGTCGTACGCTCTCCGATTACAACATC 253199 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || || || || || || || Sbjct 253200 CAGAAGGAGTCGACGCTCCACCT 253222 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || |||||||| | || || || ||| ||| Sbjct 253584 CAGATATTCGTCAAGACACTCACGGGCAAGACGATCACGTTGGAAGTCGAGTCCTCGGAC 253643 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||||||||| || || |||||||| ||||| || Sbjct 253644 ACGATCGATAACGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAACAG 253703 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | || || | || || || || Sbjct 253704 CGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGGCGCACGCTCTCTGACTACAATATC 253763 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||| || || || ||||| Sbjct 253764 CAGAAGGAAAGCACCCTCCACCTTGT 253789 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| |||||||| || || || |||||||||||||| || ||| || Sbjct 252675 CAGATCTTCGTGAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGAT 252734 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| |||||||| ||||| ||||| || || || Sbjct 252735 ACCATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGG 252775 >seq428 Length=363050 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || |||||||||||||| || ||| ||| Sbjct 255220 CAGATTTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGAC 255279 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| || ||||| ||||| |||||||| || || Sbjct 255280 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGG 255320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203711520499544