Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq606 158 1e-33 seq495 145 7e-30 seq1041 134 1e-26 seq576 118 1e-21 seq406 113 4e-20 seq428 107 2e-18 seq855 98.7 9e-16 seq823 87.8 2e-12 >seq606 Length=277477 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || || || || ||||| |||||||| || || ||||| ||| Sbjct 253807 CCGCCACGGAGACGGAGGACAAGGTGGAGGGTGCTTTCCTTCTGGATATTGTAGTCAGAG 253748 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || |||||| |||| |||||||||||||| ||||| || || ||||||||||| | || Sbjct 253747 AGCGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCGGGAGGG 253688 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || || | ||| | | ||||| ||||| || Sbjct 253687 ATGCCCTCCTTGTCC-TGAATCTTGGCCTTCACGTTATCGATCGTGTCCGAGGACTCGAC 253629 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| ||| ||||| || ||||| || ||||| ||||| ||||||||| Sbjct 253628 TTCCAACGTGATCGTCTTGCCCGTGAGTGTCTTGACGAATATCTGCATG 253580 Score = 154 bits (170), Expect = 1e-32 Identities = 167/218 (77%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||||| || || || ||||||||||||||||||||||| |||||||| ||||| || | Sbjct 253511 ACGTACCA--AGGTGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACC 253454 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 ||| ||||| |||||||||||||| |||| |||||| || || | |||| || |||||| Sbjct 253453 GTCTTCGAGTTGCTTGCCGGCGAAAATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTT 253394 Query 41767 GTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTA 41825 ||| || | || || | ||| | | | ||||| |||||||| || | || | Sbjct 253393 ATCC-TGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGAAGACTCCACTTCAAGAGTGA 253335 Query 41826 TCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || || ||||||| |||||| ||||| ||||||||| Sbjct 253334 TAGTCTTGCCCGTCAACGTCTTAACGAAGATCTGCATG 253297 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 || || ||||| ||||||||| ||||| || |||||||| || || | || |||||| Sbjct 253222 AGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGC 253163 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 |||||||| || || ||||||||||| ||||||| || | | |||||||||| || | Sbjct 253162 TGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCC-TGGAT 253104 Query 41777 TTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 || || | ||| | | |||||| |||||| ||||| | ||| || || || || Sbjct 253103 CTTCGCCTTGACGTTATCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCC 253044 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||||| || || |||||||| Sbjct 253043 AGTCAAGGTCTTGACAAAGATCTGCAT 253017 Score = 107 bits (118), Expect = 2e-18 Identities = 80/94 (85%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 || ||||| ||| ||||||||| ||||| ||||| ||||| |||||| |||| |||||| Sbjct 252932 AGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTGCGCCCGTCCTCGAGC 252873 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 |||||||| ||||| || |||||||| ||||||| Sbjct 252872 TGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCCG 252839 >seq495 Length=337734 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | || || || || || |||||||||||| || |||||||| Sbjct 131642 CCGCCGCGCAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAA 131701 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| |||||||||||||||||||| || |||||||| ||||| | || Sbjct 131702 AGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGGTCGGGCGGG 131761 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || | || || | || | | | ||||| ||||||||| Sbjct 131762 ATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACATTGTCAATCGTGTCCGACGACTCCAC 131820 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || ||||| || ||||| || ||||| || || ||||||||| Sbjct 131821 TTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCATG 131869 Score = 123 bits (136), Expect = 2e-23 Identities = 156/209 (75%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 || || ||||||||||||||||||||||||||||| || |||||||| | || || | | Sbjct 130927 AGGTGGAGCGTGCTCTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCATCCTCCAAC 130986 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCCATGAT 41775 |||||||||||||| || || ||||| || || |||||| | | |||||| ||| || Sbjct 130987 TGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGCGGGATC-CCCTCCTTATCC-TGGA 131044 Query 41776 TTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTAC 41834 | || || | || | | | ||||| |||||| || || | ||| || || || | Sbjct 131045 TCTTCGCCTTGACATTGTCAATCGTGTCCGACGACTCGACTTCGAGCGTAATGGTCTTCC 131104 Query 41835 CCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || || ||||| || ||||| |||||| Sbjct 131105 CGGTAAGGGTCTTGACAAAAATTTGCATG 131133 Score = 123 bits (136), Expect = 2e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | || || || || ||| ||||||||||||||| ||||| || Sbjct 131869 GCCGCCACGAAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGA 131928 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| || |||| |||||||||||||||||||| ||||||||||| ||||| | ||| Sbjct 131929 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 131988 Query 41755 AACGCT 41760 | ||| Sbjct 131989 GATGCT 131994 >seq1041 Length=164984 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || |||||||| ||||||||| ||||| ||||| || Sbjct 54682 CCACCACGAAGGCGGAGGACAAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCAGAC 54741 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||| ||||| || ||||| || || || | |||| Sbjct 54742 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGATCAGGGGGA 54801 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || |||| || | | | ||||| ||||| || Sbjct 54802 ATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACATTGTCGATGGTGTCAGAGGACTCGAC 54860 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| || || || || ||||| ||||| ||||| |||||||| Sbjct 54861 CTCGAGCGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 54908 Score = 125 bits (138), Expect = 7e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| || ||||||||||| || || || | || || ||||||||||| ||||| Sbjct 54489 CTCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCTCCAGCTGCTTGCCCGCGAA 54548 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || |||||||| ||||| | |||| | |||||||||| ||| | || || | || Sbjct 54549 AATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCC-TGAATCTTCGCCTTGACAT 54607 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | ||||| ||||| ||||| | ||| ||||| || || || || ||||| | Sbjct 54608 TGTCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTCCCAGTGAGGGTCTTGA 54667 Query 41850 CGAAAATCTGCAT 41862 ||||||||||||| Sbjct 54668 CGAAAATCTGCAT 54680 Score = 102 bits (112), Expect = 8e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || ||| ||||||||||||||| ||||| || Sbjct 55189 GCCACCACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGA 55248 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 || ||||| |||| |||||||||||||| ||||| |||| |||||| ||||| Sbjct 55249 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTC 55302 >seq576 Length=23070 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||| | ||||| | | || || || || |||||||| | | ||| |||| || Sbjct 15343 GCCGCCGTGGAGACGAAGGCCAAGGTGGAGGATGGTCTCCTTCCGGACGTTGTAGTTAGA 15284 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| |||||| |||| |||||||||||||| | ||| || | ||||| || || | || Sbjct 15283 GAGCGTGCGCCCGTCCTCGAGCTGCTTGCCCGTGAAGATGATACGCTGCTGATCGGGAGG 15224 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| | || || | ||| | | | ||||| ||||| | Sbjct 15223 GATGCACTCCTTGTCC-TGAATCTTGGCCTTCACGTTGTCAATCGTGTCCGAGGACTCGA 15165 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| ||| ||||| || |||||| ||||| ||||| | |||||| Sbjct 15164 CTTCCAACGTAATCGTCTTGTCCGTCAACGTCTGAACGAAGACCTGCAT 15116 Score = 98.7 bits (108), Expect = 9e-16 Identities = 141/197 (72%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| || |||||||| || || |||| ||||||||||| || || || Sbjct 15026 CTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCGTCCTCGAGCTGCTTTCCCGCAAA 14967 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTT----TTTGCT-TC 41785 |||||||| | | ||||| | || | | ||||||| || ||| | |||| | || Sbjct 14966 TATCAGGCACCGCTGGTCAGGAGGGATACCCTCCTTGGCCTGGATCTTCGCTTTGATATC 14907 Query 41786 AACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTC 41845 | || | |||||| |||||| ||||| | | | | || || || |||| ||| Sbjct 14906 ATCG-----ATCGTGTCGGACGACTCGACCTCGAGCATGACGGTCTTGCCGGTCAAGGTC 14852 Query 41846 TTTACGAAAATCTGCAT 41862 || || || |||||||| Sbjct 14851 TTAACAAAGATCTGCAT 14835 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 || ||||| ||| |||||||| ||||| |||| ||||| |||||| |||| |||||| Sbjct 14750 AGGTGCAGAGTGAACTCCTTCTACATGTTGCAGTCCGAGAGTGTGCGCCCGTCCTCGAGC 14691 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| ||||||| || | ||| || | ||||| ||| Sbjct 14690 TGCTTCCCGGCGAGGATTAAGCGTTGCTAGTCCGGGGG 14653 >seq406 Length=388386 Score = 113 bits (124), Expect = 4e-20 Identities = 174/246 (71%), Gaps = 18/246 (7%) Strand=Plus/Minus Query 41635 GCCGCCGCGTA---GACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| ||||| | |||| | ||| ||||||||||| ||||||||||||||| || || Sbjct 234867 GCCACCGCGGACTCGACGGAGCACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATC 234808 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG- 41750 ||||| ||||| |||| ||||||||||| | |||||| ||||||||||| ||| | | Sbjct 234807 GGAGACCGTGCGACCGTCCTCGAGCTGCTTACTGGCGAAGATCAGGCGCTGCTGGCCGGA 234748 Query 41751 ------CGGGAAC------GCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACA 41797 ||| ||| |||||||||||| ||| || |||| ||| | | | Sbjct 234747 AGGCAACGGTAACCACTCACCTCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTGTCGATG 234689 Query 41798 GTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATC 41857 ||||| | ||||||||| | | | || | || || || ||||| ||||| ||| Sbjct 234688 GTGTCAGAAGCCTCCACCTCGAGGATAACGGTCTGGCCGGTGAGTGTCTTGACGAAGATC 234629 Query 41858 TGCATG 41863 |||||| Sbjct 234628 TGCATG 234623 >seq428 Length=363050 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| || || || ||| ||||||||| ||||| |||||| | Sbjct 255504 CCACCACGCAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 255445 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| |||||||||||||||||||| ||||||||||| ||||| | ||| Sbjct 255444 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 255386 >seq855 Length=205711 Score = 98.7 bits (108), Expect = 9e-16 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| || || || ||| ||||||||| ||||| |||||| |||||||| | || || Sbjct 132361 CACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTC 132420 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||||||||||| ||||||||||| ||||||| ||| Sbjct 132421 AAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 132462 >seq823 Length=214425 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/117 (77%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGT---AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| ||||| ||||| | ||| || |||||||| ||||||||||||||| || || Sbjct 1259 GCCACCGCGAAGACGCCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAATC 1318 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 ||||| | ||| |||| ||||||||||| | ||||| |||||||| | ||||| Sbjct 1319 GGAGATCGCGCGACCGTCCTCGAGCTGCTTACTTGCGAAGATCAGGCGTCGCTGGTC 1375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462296626251200