Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 125 6e-24 seq25 111 1e-19 seq6 104 2e-17 >seq1 Length=3640883 Score = 125 bits (138), Expect = 6e-24 Identities = 155/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 118529 CACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCT 118587 ||||||| || | ||| |||||| |||||||| |||||| | || ||| |||| Sbjct 1685313 CACCAAGGTGAAGGGTACTCTCTTTCTGAATGTTATAATCGGAGAGCGTACGCCCGTCCT 1685254 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | | ||| ||||||||| ||||||||||||||||||| ||||| ||||| |||||||| Sbjct 1685253 CCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCT 1685194 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || ||| || || | || | || |||| ||||||||| | ||| | || | Sbjct 1685193 GGATCTTTGCCTTCACGTTGTCAATTGTATCCGACGACTCGACCTCCAAGGTGATAGTCT 1685134 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || ||||| || || ||||| |||||||| Sbjct 1685133 TCCCCGTCAGCGTCTTCACAAAGATCTGCAT 1685103 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || ||||||||||| ||| | ||||| ||||||||||| || ||| Sbjct 1684281 GTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCA 1684222 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| |||||||| |||||||| || |||||||| || ||| ||| || Sbjct 1684221 GCAAAGATGAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGAATCTTTGCCTTC 1684162 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | |||||| || | || | ||| || || || || || Sbjct 1684161 ACGTTGTCGATTGTGTCGGATGACTCGACTTCAAGCGTAATCGTCTTCCCCGTAAGGGTC 1684102 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 1684101 TTGACAAAGATCTGCAT 1684085 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || ||||| || ||||| | ||| || |||||||||||||| || Sbjct 1685071 GTAGACTCCTTCTGAATATTATAATCAGAAAGAGTACGACCGTCCTCGAGCTGTTTGCCG 1685012 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || ||||| ||||| ||||| |||||||||||||| || || || Sbjct 1685011 GCGAAGATCAGGCGCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 1684952 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | ||||||||||| || | |||||| || |||| || Sbjct 1684951 ACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGAGTGATCGTTTTCCCTGTCAAGGTC 1684892 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| || ||||| Sbjct 1684891 TTCACAAAGATTTGCAT 1684875 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118541 TGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCC 118600 ||| ||||| || |||||||||||||| || || || ||| || | ||| || || Sbjct 1684510 TGTCGACTCCTTCTGAATGTTGTAATCCGACAACGTCCGACCATCTTCCAACTGCTTCCC 1684451 Query 118601 AGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTT 118660 |||| |||||||||| |||||||| || || ||||||||||| ||| || || ||| Sbjct 1684450 AGCGAAGATGAGACGTTGCTGATCAGGGGGAATGCCCTCCTTATCTTGGATCTTGGCTTT 1684391 Query 118661 AACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | ||||| | | ||| ||||| | || | ||| || || |||| ||| Sbjct 1684390 GACGTTATCAATTGTGTCAGAGGACTCCACCTCCAGCGTGATCGTCTTTCCCGTCAAAGT 1684331 Query 118721 TTTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 1684330 CTTGACGAAAATCTGCAT 1684313 Score = 111 bits (122), Expect = 1e-19 Identities = 152/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 118529 CACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCT 118587 ||||||| || | |||||||| || || ||||||||||| | || || ||||| Sbjct 1684804 CACCAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGAAAGTGTACGACCATCCT 1684745 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 |||| || ||||||||| | || || |||||||| || ||||| || ||||||||||| Sbjct 1684744 CGAGTTGCTTTCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCT 1684685 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || ||| || || | |||| ||||| | |||||||| | || | || | Sbjct 1684684 GGATCTTTGCCTTCACGTTGTCGATTGTGTCAGAAGATTCGACCTCAAGAGTGATAGTCT 1684625 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| ||| || |||||||| ||||| Sbjct 1684624 TGCCAGTCAAAGTCTTCACAAAAATTTGCAT 1684594 Score = 102 bits (112), Expect = 7e-17 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| || || ||||| || ||||||| ||||| ||||| Sbjct 3580735 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCGCTCAGCGTGCGACCGTCCTCA 3580794 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGC 118635 ||||| ||||| ||| |||| |||||||||||||||||||| |||| Sbjct 3580795 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCGGGAGGGATGC 3580840 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| ||| ||||| || ||||||||||| ||| || ||||| ||| || Sbjct 1684065 ACCAAGTGGAGTGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGGCCATCTTCC 1684006 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGC 118635 ||||| || |||||| |||| | ||||| || || ||||| |||| Sbjct 1684005 AGCTGCTTGCCAGCGAAGATCAAGCGCTGTTGGTCAGGAGGAATGC 1683960 >seq25 Length=839721 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAG 118607 || || |||||||||||||| | ||||| |||||| | || || ||||| || Sbjct 326886 TCCTTCTGAATGTTGTAATCAGAGAGCGTGCGACCATCCTCCAATTGCTTGCCAGCAAAG 326945 Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667 ||||||||||| || || ||||| |||||||||||||| ||| || || || | Sbjct 326946 ATGAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTA 327005 Query 118668 TCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 |||| |||||||| ||| ||||| | || | ||| ||||| ||||| || || || Sbjct 327006 TCGATGGTGTCCGACGACTCAACCTCAAGAGTAATCGTCTTGCCCGTCAGGGTCTTGACG 327065 Query 118728 AAAATCTGCAT 118738 || |||||||| Sbjct 327066 AAGATCTGCAT 327076 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| ||| ||| || ||||||||||| || | ||| || ||||| | ||| Sbjct 327157 TGGAGGGTACTCTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGACCGTCCTCCAACTGC 327216 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 ||||||||| | || || ||||||||||| || || || ||||||||||| ||| || Sbjct 327217 TTTCCAGCGAAAATCAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTC 327276 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| |||||| | | ||||||||||| || | || || |||||| Sbjct 327277 GCCTTCACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTCCCGGTC 327336 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 | || || ||||| |||||||| Sbjct 327337 AACGTCTTGACAAAGATCTGCAT 327359 Score = 105 bits (116), Expect = 6e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || || ||||| || | |||||| |||||||||||| || || ||| | Sbjct 327446 CTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAA 327505 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| || |||||||| |||||||| ||||| ||||| || ||| || || || | Sbjct 327506 GATTAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGAATCTTCGCCTTGACATT 327565 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| |||||| | | ||| ||||| | ||| | || || || |||| || || || Sbjct 327566 GTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATAGTCTTCCCCGTCAACGTCTTGAC 327625 Query 118727 AAAAATCTGCATG 118739 ||| ||||||||| Sbjct 327626 AAAGATCTGCATG 327638 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | ||| |||| ||| | || ||| || || || ||||| ||| Sbjct 326566 CCACCGCGGAGACGCAAGACCAGGTGAAGCGTGCTCTCCTTCTGGATATTGTAGTCGGAA 326625 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||||| ||||| || || || |||| || |||||||| || ||||| Sbjct 326626 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGA 326685 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||||||||| || ||| || || || | |||| |||||||| ||| ||| Sbjct 326686 ATGCCCTCCTTATCCTGAATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCAACC 326745 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| ||| | ||| || || |||| || || || |||||||||||| Sbjct 326746 TCGAGGGTGATCGTCTTACCAGTCAACGTCTTAACGAAAATCTGCATG 326793 >seq6 Length=2010026 Score = 104 bits (114), Expect = 2e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| |||| || ||||| || || |||||||||||||||| |||||| |||||| Sbjct 1330050 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGCTCAAAGTGCGACCATCCTC 1330109 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT 118633 |||||| || |||||| ||||||| ||||| || |||||||| || Sbjct 1330110 GAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCGGGAGGGAT 1330154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829728511884