Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq25 127 2e-24 seq1 111 2e-19 >seq25 Length=839721 Score = 127 bits (140), Expect = 2e-24 Identities = 157/211 (74%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 42975 ACCAA-ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| |||||| ||||||||||| || |||||||| |||| ||||| || | || || Sbjct 327428 ACCAAGATGCAACGTGCTCTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCTC 327487 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || || ||||||||||||| || | || ||||| ||| | Sbjct 327488 GAGCTGCTTGCCCGCGAAGATTAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCC-T 327546 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || | || | |||| | | | |||||| || ||||| || | ||||| || | Sbjct 327547 GAATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATAGTCT 327606 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| | |||||| |||||||| ||||| Sbjct 327607 TCCCCGTCAACGTCTTGACAAAGATCTGCAT 327637 Score = 104 bits (114), Expect = 3e-17 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| |||| || | ||||||||||| || |||||||| || | || || || | Sbjct 326577 ACGCAAGACCAGGTGAAGCGTGCTCTCCTTCTGGATATTGTAGTCGGAAAGCGTACGACC 326636 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || || || || || ||||||||||| | || | || |||||| Sbjct 326637 GTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTT 326696 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 ||| ||| | || | |||| ||| | | | ||||| ||| || || |||| ||| Sbjct 326697 ATCC-TGAATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGACGACTCAACCTCGAGGGTG 326754 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || || | |||||| || || || ||||| Sbjct 326755 ATCGTCTTACCAGTCAACGTCTTAACGAAAATCTGCAT 326792 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/98 (82%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 42975 ACCAA-ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | |||||||||||| || |||||||| || | ||||| || |||| || Sbjct 327714 ACCAAGATGGAGTGTGCTCTCCTTCTGGATATTGTAGTCCGAGAGAGTGCGGCCGTCCTC 327773 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071 || |||||||||||||| || || ||||||||||||| Sbjct 327774 GAGTTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCGG 327811 >seq1 Length=3640883 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| |||||||| ||||||| ||||| || |||| || ||||| || || ||||| Sbjct 1685066 CTCCTTCTGAATATTATAATCAGAAAGAGTACGACCGTCCTCGAGCTGTTTGCCGGCGAA 1685007 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||| || || | || | || |||||||||| ||| || |||| ||| Sbjct 1685006 GATCAGGCGCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 1684948 Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| ||||| ||||| || || | ||||| | Sbjct 1684947 TGTCGATGGTGTCGGAAGACTCGACCTCGAGAGTGATCGTTTTCCCTGTCAAGGTCTTCA 1684888 Query 43171 CAAAGATTTGCAT 43183 ||||||||||||| Sbjct 1684887 CAAAGATTTGCAT 1684875 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | || || || |||| || |||||||| ||||| || Sbjct 1684276 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCAGCAAA 1684217 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | | |||||| ||| ||| | |||| | ||| Sbjct 1684216 GATGAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTATCC-TGAATCTTTGCCTTCACGT 1684158 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || || | ||| || || || ||||| || ||||| | Sbjct 1684157 TGTCGATTGTGTCGGATGACTCGACTTCAAGCGTAATCGTCTTCCCCGTAAGGGTCTTGA 1684098 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 1684097 CAAAGATCTGCAT 1684085 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||||| || || || | || || || ||||| |||||||| Sbjct 1684785 CTCCTTCTGGATGTTGTAATCAGAAAGTGTACGACCATCCTCGAGTTGCTTTCCAGCGAA 1684726 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||||||| ||| ||| || | ||| Sbjct 1684725 AATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTTGCCTTCA-CGT 1684667 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| ||||| || || | ||||| || ||||| || | ||||| | Sbjct 1684666 TGTCGATTGTGTCAGAAGATTCGACCTCAAGAGTGATAGTCTTGCCAGTCAAAGTCTTCA 1684607 Query 43171 CAAAGATTTGCAT 43183 |||| |||||||| Sbjct 1684606 CAAAAATTTGCAT 1684594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816692239560