Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq25 127 2e-24 seq1 109 4e-19 >seq25 Length=839721 Score = 127 bits (140), Expect = 2e-24 Identities = 156/212 (74%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 45126 ATACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 |||||||| || || ||||| ||||||||||||||||| || || |||| | || Sbjct 326865 ATACCAAGGTGGAGAGTGCTTTCCTTCTGAATGTTGTAATCAGAGAGCGTGCGACCATCC 326924 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| || || || || || | ||||||||||| ||||| | |||||||||||| Sbjct 326925 TCCAATTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTGTCC 326984 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | | ||||| ||| ||||| | ||||||||| Sbjct 326985 TGAATCTTCGCCTTCACGTTATCGATGGTGTCCGACGACTCAACCTCAAGAGTAATCGTC 327044 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||||||| ||||| || ||||| ||||| Sbjct 327045 TTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 327076 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||| ||| ||||||||||||||||| || ||||||||| || ||| |||| Sbjct 326581 AAGACCAGGTGAAGCGTGCTCTCCTTCTGGATATTGTAGTCGGAAAGCGTACGACCGTCC 326640 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| || || ||||| || |||| ||||| ||||| ||||| | |||||||| ||| Sbjct 326641 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTATCC 326700 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | | ||||| ||| ||||| | ||| |||||| Sbjct 326701 TGAATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCAACCTCGAGGGTGATCGTC 326760 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || |||| ||||| || || || |||||| Sbjct 326761 TTACCAGTCAACGTCTTAACGAAAATCTGCATG 326793 Score = 109 bits (120), Expect = 4e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 ||||||| |||| ||||||||||||||| || |||||||| || ||| | || | Sbjct 327427 TACCAAGATGCAACGTGCTCTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCT 327486 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 | || || || || ||||| || | ||||| ||||||||||| | || ||||| ||| Sbjct 327487 CGAGCTGCTTGCCCGCGAAGATTAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCT 327546 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 ||| || ||| || | | | |||| ||||||||| | ||| || |||| Sbjct 327547 GAATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATAGTCT 327606 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | ||||||| ||||| |||||||| |||||| Sbjct 327607 TCCCCGTCAACGTCTTGACAAAGATCTGCATG 327638 Score = 104 bits (114), Expect = 2e-17 Identities = 151/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 45126 ATACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 ||||| || || || || ||||||||||||||||||||||| || ||| |||| Sbjct 327148 ATACCGAGATGGAGGGTACTCTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGACCGTCC 327207 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| || ||||| ||||| |||| ||||| || || || || | ||||||||||||| Sbjct 327208 TCCAACTGCTTTCCAGCGAAAATCAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCC 327267 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | | |||| ||| ||||| | || || ||| Sbjct 327268 TGAATCTTCGCCTTCACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTC 327327 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| ||||| |||||||| ||||| Sbjct 327328 TTCCCGGTCAACGTCTTGACAAAGATCTGCAT 327359 >seq1 Length=3640883 Score = 109 bits (120), Expect = 4e-19 Identities = 151/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 45128 ACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| || || || ||||||||| |||||||| || ||| ||| | || || Sbjct 1684803 ACCAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGAAAGTGTACGACCATCCTC 1684744 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||||| ||||| ||||| |||| ||||| ||||| ||||| | ||||||||||||| Sbjct 1684743 GAGTTGCTTTCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTG 1684684 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || ||| ||| || | | |||| | || ||||| | || || ||||| Sbjct 1684683 GATCTTTGCCTTCACGTTGTCGATTGTGTCAGAAGATTCGACCTCAAGAGTGATAGTCTT 1684624 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||| |||||||||||| |||||||| Sbjct 1684623 GCCAGTCAAAGTCTTCACAAAAATTTGCAT 1684594 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||||||| || ||| |||| || || || || || || || Sbjct 1684276 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCAGCAAA 1684217 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| ||||||||||| | ||||||||| ||| ||| ||| ||| || Sbjct 1684216 GATGAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGAATCTTTGCCTTCACGTT 1684157 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| ||| || || | ||||||||||| ||||| || ||||| || Sbjct 1684156 GTCGATTGTGTCGGATGACTCGACTTCAAGCGTAATCGTCTTCCCCGTAAGGGTCTTGAC 1684097 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 1684096 AAAGATCTGCAT 1684085 Score = 104 bits (114), Expect = 2e-17 Identities = 153/212 (72%), Gaps = 5/212 (2%) Strand=Plus/Minus Query 45128 ACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| || || || ||||| ||||||||||| || ||| || || |||| || Sbjct 1685312 ACCAAGGTGAAGGGTACTCTCTTTCTGAATGTTATAATCGGAGAGCGTACGCCCGTCCTC 1685253 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || ||||| ||||| || | ||||| || || ||||| | || ||||||||| Sbjct 1685252 CAACTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTG 1685193 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACC--CTCCACCTCCACGGTAATCGTC 45304 || ||| ||| || | | || ||| || | ||| ||||||| ||| || ||| Sbjct 1685192 GATCTTTGCCTTCAC-GTTGTCAAT-TGTATCCGACGACTCGACCTCCAAGGTGATAGTC 1685135 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||| |||||||||||||| ||||| Sbjct 1685134 TTCCCCGTCAGCGTCTTCACAAAGATCTGCAT 1685103 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||| || || || || ||| |||| || || ||||| |||||||| Sbjct 1685066 CTCCTTCTGAATATTATAATCAGAAAGAGTACGACCGTCCTCGAGCTGTTTGCCGGCGAA 1685007 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| |||||||| || ||||| | |||||||||||| || || ||| || Sbjct 1685006 GATCAGGCGCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 1684947 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | ||| ||||| | || ||||| || || |||| |||||||| Sbjct 1684946 GTCGATGGTGTCGGAAGACTCGACCTCGAGAGTGATCGTTTTCCCTGTCAAGGTCTTCAC 1684887 Query 45325 AAAGATTTGCAT 45336 |||||||||||| Sbjct 1684886 AAAGATTTGCAT 1684875 Score = 87.8 bits (96), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| ||||| |||||| |||| |||| |||| || Sbjct 3580735 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCGCTCAGCGTGCGACCGTCCTCA 3580794 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || ||||||||||| |||| ||||| || |||||||| Sbjct 3580795 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCGGGAGG 3580835 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||||||| || ||| | || ||| Sbjct 1684065 ACCAAGTGGAGTGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGGCCATCTTCC 1684006 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || || || ||||| ||||| ||||||||||| ||||| Sbjct 1684005 AGCTGCTTGCCAGCGAAGATCAAGCGCTGTTGGTCAGGAGG 1683965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074588497667