Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 102 8e-17 seq25 89.7 5e-13 seq3 86.0 6e-12 >seq1 Length=3640883 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || |||||||| ||||| || || | ||||| | ||| Sbjct 1684515 TGAAGTGTCGACTCCTTCTGAATGTTGTAATCCGACAACGTCCGACCATCTTCCAACTGC 1684456 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || ||||| |||| |||||||||||||| || || ||||| || || || ||| || Sbjct 1684455 TTCCCAGCGAAGATGAGACGTTGCTGATCAGGGGGAATGCCCTCCTTATCTTGGATCTTG 1684396 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||| | | || | |||||| | || ||||||||| | || | |||||| || ||| Sbjct 1684395 GCTTTGACGTTATCAATTGTGTCAGAGGACTCCACCTCCAGCGTGATCGTCTTTCCCGTC 1684336 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 || || || ||||| || |||||| Sbjct 1684335 AAAGTCTTGACGAAAATCTGCATA 1684312 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| ||| |||||| ||||||||||||||| | || | | ||| || | ||| Sbjct 1685306 GTGAAGGGTACTCTCTTTCTGAATGTTATAATCGGAGAGCGTACGCCCGTCCTCCAACTG 1685247 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || ||||| |||| ||||| |||||||| ||||| |||||||| ||||| ||| || Sbjct 1685246 CTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTT 1685187 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | || | | || | ||| || | | ||| ||||| | ||| | ||||| || || Sbjct 1685186 TGCCTTCACGTTGTCAATTGTATCCGACGACTCGACCTCCAAGGTGATAGTCTTCCCCGT 1685127 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || ||| || || || || ||||| Sbjct 1685126 CAGCGTCTTCACAAAGATCTGCAT 1685103 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | |||| |||||||| || ||||| |||||||| Sbjct 1685101 CCACCACGCAGACGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATATTATAATCAGAA 1685042 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| ||||||||||| || || ||||||| || || ||||| ||||| Sbjct 1685041 AGAGTACGACCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGGCGCTGTTGATCAGGAGGG 1684982 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | ||||||| | ||| ||| Sbjct 1684981 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACC 1684922 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | ||| || || ||||| || || || || ||||||||| || Sbjct 1684921 TCGAGAGTGATCGTTTTCCCTGTCAAGGTCTTCACAAAGATTTGCATACCT 1684871 Score = 93.3 bits (102), Expect = 4e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| |||||||| || || |||||||| ||||||| |||| ||| || Sbjct 3580735 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCGCTCAGCGTGCGACCGTCCTCA 3580794 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGC 139661 ||||| || || || |||||||||| |||||||||||||| |||| Sbjct 3580795 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCGGGAGGGATGC 3580840 >seq25 Length=839721 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| || || || |||| || || ||||| |||||||| |||||||| || Sbjct 327483 TCCTCGAGCTGCTTGCCCGCGAAGATTAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTA 327542 Query 139670 TCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | || | | || | ||||||| || ||||||||||| ||| | Sbjct 327543 TCC-TGAATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGAT 327601 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || |||||||| || || || || ||||| Sbjct 327602 AGTCTTCCCCGTCAACGTCTTGACAAAGATCTGCAT 327637 >seq3 Length=2745113 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/153 (73%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 52894 GGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATG 52953 |||||||||||||| | |||||| ||||||||||||| ||||| || | ||| || | Sbjct 2543091 GGCATGAACGCGACGCTCATGTGCCAGTACATCGAGTTCGTTGCCGATCGTCTGGTGGTT 2543150 Query 52954 CAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCG--TTTATGAACAACA 53011 |||||| | || || ||| || ||| ||||| ||||| |||||| | | | Sbjct 2543151 GCCCTCGGTAACCCTAAGATCTACAACGCGACGAACCC--TTTCGACTTTATGGATATGA 2543208 Query 53012 TATCGCTCGAGGGCAAAACAAACTTTTTCGAGA 53044 | ||||| | ||||| || ||||| ||||||| Sbjct 2543209 TCTCGCTGCAAGGCAAGACGAACTTCTTCGAGA 2543241 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 52894 GGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATG 52953 ||||||||||| | | ||||| ||||||||||||| || || ||| | || || | Sbjct 2540331 GGCATGAACGCCTCGCTCATGTGTCAGTACATCGAGTTCGTCGCCGACCGCCTCCTGGTC 2540272 Query 52954 CAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATA 53013 |||||| | ||||| |||| || || |||||||| || ||| || |||| Sbjct 2540271 TCGCTCGGGAACCCGAAGCACTACAACTCGTCGAACCCCTTCGACTTCATGGACCTCATA 2540212 Query 53014 TCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGT 53051 ||||| | ||||| || ||||| ||||||| ||||| Sbjct 2540211 TCGCTGCAAGGCAAGACCAACTTCTTCGAGAAGCGTGT 2540174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063212498400