Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 145 2e-29 seq25 132 1e-25 seq3 87.8 4e-12 >seq1 Length=3640883 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || ||||| | ||||| || |||||||||||||| ||| Sbjct 1685104 ATTCCACCACGCAGACGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATATTATAATCA 1685045 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | |||||| || || ||||| || || || || || | ||||||||||||| Sbjct 1685044 GAAAGAGTACGACCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGGCGCTGTTGATCAGGA 1684985 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || || || || | ||| ||| || || Sbjct 1684984 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCG 1684925 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || || || | || || ||||| || ||||| Sbjct 1684924 ACCTCGAGAGTGATCGTTTTCCCTGTCAAGGTCTTCACAAAGATTTGCAT 1684875 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | ||||| || |||||||| || ||||| || || || | ||||| Sbjct 1684297 AAGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTC 1684238 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || |||||||| || || | ||| || || ||||| || || || ||||| Sbjct 1684237 CTCGAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTATC 1684178 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||||| || || || || | || ||| | || || || || ||||| || Sbjct 1684177 CTGAATCTTTGCCTTCACGTTGTCGATTGTGTCGGATGACTCGACTTCAAGCGTAATCGT 1684118 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || ||||| || || ||||| |||||||| Sbjct 1684117 CTTCCCCGTAAGGGTCTTGACAAAGATCTGCAT 1684085 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||||||||| ||||| || || || || | ||||| || | || |||||||| || Sbjct 1685293 TCTTTCTGAATGTTATAATCGGAGAGCGTACGCCCGTCCTCCAACTGCTTTCCAGCGAAG 1685234 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| ||||| ||||| || ||||| || ||||| |||||||| || || || Sbjct 1685233 ATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACGTTG 1685174 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||||| | || ||||| | || |||||||| || || || || || ||| Sbjct 1685173 TCAATTGTATCCGACGACTCGACCTCCAAGGTGATAGTCTTCCCCGTCAGCGTCTTCACA 1685114 Query 104549 AATATCTGCATT 104560 || ||||||||| Sbjct 1685113 AAGATCTGCATT 1685102 >seq25 Length=839721 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || |||||||| || |||||||| ||||| | |||||| || | || |||||||| ||| Sbjct 327169 TCCTTCTGAATGTTGTAGTCAGAAAGAGTACGACCGTCCTCCAACTGCTTTCCAGCGAAA 327228 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| |||||||| || || || || || ||||||||||| || || ||||| Sbjct 327229 ATCAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTCGCCTTCACATTG 327288 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| ||| | || ||||| || || || ||||| || || | || || ||| Sbjct 327289 TCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTCCCGGTCAACGTCTTGACA 327348 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 327349 AAGATCTGCAT 327359 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| ||||| |||||||| ||||| | || || || || || || || || || Sbjct 327447 TCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAG 327506 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 ||||| | ||| || || ||||| || ||||| |||||||||||||| || || ||||| Sbjct 327507 ATTAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGAATCTTCGCCTTGACATTG 327566 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| ||| | || ||||| || || |||||||| || || | || || ||| Sbjct 327567 TCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATAGTCTTCCCCGTCAACGTCTTGACA 327626 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 327627 AAGATCTGCAT 327637 Score = 123 bits (136), Expect = 6e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 104368 TTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 104427 ||| |||||||| || || ||||| || || | ||| || || | ||| || |||||||| Sbjct 326885 TTCCTTCTGAATGTTGTAATCAGAGAGCGTGCGACCATCCTCCAATTGCTTGCCAGCAAA 326944 Query 104428 AATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATT 104487 || || | |||||| |||||||| || || || || ||||||||||| || || || || Sbjct 326945 GATGAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTT 327004 Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | ||| || | || ||||| || ||||| ||||| || || || || || || Sbjct 327005 ATCGATGGTGTCCGACGACTCAACCTCAAGAGTAATCGTCTTGCCCGTCAGGGTCTTGAC 327064 Query 104548 AAATATCTGCATT 104560 || ||||||||| Sbjct 327065 GAAGATCTGCATT 327077 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| ||||| ||||| || || || | |||||| || || || || || ||||| Sbjct 326602 TCCTTCTGGATATTGTAGTCGGAAAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCAAAG 326661 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || || ||||| || || || |||||||||||||| || || || || Sbjct 326662 ATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTATCCTGAATCTTCGCCTTGACGTTG 326721 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| || | || ||||| || || || ||||||||||| | || || || Sbjct 326722 TCGATGGTGTCCGACGACTCAACCTCGAGGGTGATCGTCTTACCAGTCAACGTCTTAACG 326781 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 326782 AAAATCTGCAT 326792 >seq3 Length=2745113 Score = 87.8 bits (96), Expect = 4e-12 Identities = 355/558 (64%), Gaps = 6/558 (1%) Strand=Plus/Minus Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792 || ||| | ||||||||| | || | || ||||| ||||| |||||||| | || || Sbjct 2541063 ATCTGGCGAATGTACAAAAAAGCAGAAGCATCTTTCTGGACAGTAGAAGAGATCGACCTA 2541004 Query 268793 TCTTATGACTTAATAGATTGGAAAAA---TTTAAAACCAGAAGAAAGAAGATTTATATCT 268849 || |||| | | ||| ||||| | | | || | | || | || || || Sbjct 2541003 TCCCATGATCTCACAGACTGGAACGACCGTCTCAATGCCAACGAGCGGTACTTCATCTCG 2540944 Query 268850 TATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAG 268909 || | | || || || || | || || || || ||||||||||| || ||| Sbjct 2540943 AATGTCTTAGCTTTCTTCGCCGCCTCCGACGGCATAGTGAACGAAAATCTCGTCGAGCGC 2540884 Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969 |||| | | ||||| || | |||| || ||||| || ||||| ||||||||| ||| Sbjct 2540883 TTCTCTAACGAGGTTCAAGCTGCTGAGGCAAGATGCTTCTACGGCTTCCAGATAATGATA 2540824 Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAAC 269029 || || || || || |||| ||| ||| | || || || || || | || || Sbjct 2540823 GAGAACATCCACTCCGAGACCTACTCGCTACTCATCGACACATACATCAAAGACCCTGAC 2540764 Query 269030 GAAAAGAAAAGACTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAA 269089 || | || | | | || | | || || | | || ||| | || Sbjct 2540763 GAGCGTGATCACCTCCTCAATGCCATAACCTCCATTCCTTGCATCAAGAAGAAAGCCGAC 2540704 Query 269090 TGGGCTCTGAAATGGATAAACGATAGCGCGCCT---TACGGAGAAAGGTTAGTTGCTTTT 269146 ||||| ||| |||||| ||| | || | | || || || | |||||||| Sbjct 2540703 TGGGCGCTGCGCTGGATATCCGACAAGACGTCGGTATTTGGGGAGCGGCTCGTTGCTTTC 2540644 Query 269147 GCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAA 269206 |||||||| ||||| || ||||| || || || || || | || || ||| | ||||| Sbjct 2540643 GCCGCTGTGGAAGGCATCTTCTTCTCCGGATCCTTCGCGTCAATATTCTGGCTCAAGAAG 2540584 Query 269207 AGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTA 269266 | || || ||||| || | || ||||||||||| | || ||| | ||||| || | Sbjct 2540583 CGCGGACTCATGCCCGGGCTGACGTTCTCTAACGAGCTCATCAGCCGCGACGAGGGCATG 2540524 Query 269267 CACTGCGACTTCGCTTGT 269284 || ||||||||| ||| Sbjct 2540523 CATACCGACTTCGCGTGT 2540506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396526458916