Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq6 107 2e-18 seq25 96.9 3e-15 seq3 82.4 7e-11 >seq1 Length=3640883 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| || || | ||| | ||| |||||||| ||||||||||| ||| Sbjct 1684311 CCGCCACGCAGACGAAGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 1684252 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || || |||| | ||||||||||| |||||| Sbjct 1684251 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCGGGAGGG 1684192 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || ||| | | || ||| | | || | || |||| ||||||| Sbjct 1684191 ATACCCTCCTTATC-CTGAATCTTTGCCTTCACGTTGTCGATTGTGTCGGATGACTCGAC 1684133 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || || || || || || |||||||| Sbjct 1684132 TTCAAGCGTAATCGTCTTCCCCGTAAGGGTCTTGACAAAGATCTGCAT 1684085 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || || || | ||||||||||| ||||||||||| ||| | Sbjct 1684083 CCACCACGCAGACGGAGGACCAAGTGGAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAC 1684024 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||||||||| ||| |||| || ||||| ||||| ||||| Sbjct 1684023 AACGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGTTGGTCAGGAGGA 1683964 Query 131128 AT 131129 || Sbjct 1683963 AT 1683962 >seq6 Length=2010026 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | ||| | ||| |||||||| || ||||||||||||||| Sbjct 1330033 CCACCACGGAGACGAAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGCTC 1330092 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | ||||| ||||| |||||| Sbjct 1330093 AAAGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCGGGAGGG 1330152 Query 131128 AT 131129 || Sbjct 1330153 AT 1330154 >seq25 Length=839721 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||||| || | || | || |||||| || || ||||| ||| Sbjct 326566 CCACCGCGGAGACGCAAGACCAGGTGAAGCGTGCTCTCCTTCTGGATATTGTAGTCGGAA 326625 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| || |||| | ||||||||||||||||| Sbjct 326626 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGA 326685 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || || ||| ||||| | || | || || | ||||| | Sbjct 326686 ATGCCCTCCTTATCCTGAATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCAACC 326745 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | || ||||| || | || || ||||||||||||||| Sbjct 326746 TCGAGGGTGATCGTCTTACCAGTCAACGTCTTAACGAAAATCTGCATG 326793 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 |||||| || || ||||| || | ||||| ||||| ||||||||||| ||| | Sbjct 327446 CTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAA 327505 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||||| ||||||||||| ||||| || ||||| || || || ||| ||||| | Sbjct 327506 GATTAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGAATCTTCGCCTTGACATT 327565 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | || |||| |||||| | || | ||| | || || || || | || || || Sbjct 327566 GTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATAGTCTTCCCCGTCAACGTCTTGAC 327625 Query 131223 GAAAATCTGCATG 131235 || ||||||||| Sbjct 327626 AAAGATCTGCATG 327638 >seq3 Length=2745113 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158 |||||| ||||||||||| || ||||| | || || || || | ||||| Sbjct 2540715 AAGAAAGCCGACTGGGCGCTGCGCTGGATATCCGACAAGACGTCGGTATTTGGGGAGCGG 2540656 Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218 | || || || || |||||| ||| |||| || || || || || | || || Sbjct 2540655 CTCGTTGCTTTCGCCGCTGTGGAAGGCATCTTCTTCTCCGGATCCTTCGCGTCAATATTC 2540596 Query 46219 TACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCG 46277 | |||| || | || | |||||||||| |||||||| |||||||| || || Sbjct 2540595 TGGCTCAAGAAGCGCGGAC-TCATGCCCGGGCTGACGTTCTCTAACGAGCTCATCAGCCG 2540537 Query 46278 CGACGAGGGCCTGCATACGGACTTTGCGTGTCTC 46311 |||||||||| ||||||| ||||| ||||||||| Sbjct 2540536 CGACGAGGGCATGCATACCGACTTCGCGTGTCTC 2540503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012050679680