Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq126 140 2e-28 seq71 140 2e-28 seq1 131 1e-25 seq101 104 2e-17 seq25 104 2e-17 >seq126 Length=18628 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2258 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2317 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2318 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2352 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 11589 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 11648 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 11649 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 11683 Score = 96.9 bits (106), Expect = 2e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAA-GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||| | |||| || ||||||| |||||||||||||||||||||||||||||||||| Sbjct 4251 CTCTCTTTCCAAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCT 4310 Query 20006 CGGTAATATTTAGCCTTA 20023 || |||||||||| ||| Sbjct 4311 CGCCAATATTTAGCTTTA 4328 Score = 96.9 bits (106), Expect = 2e-15 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 19956 CAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATT 20015 |||||| ||||||| |||||||||||||||||||||||||||||||||| || |||||| Sbjct 13576 CAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCGCCAATATT 13635 Query 20016 TAGCCTTA 20023 |||| ||| Sbjct 13636 TAGCTTTA 13643 >seq71 Length=13857 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 633 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 692 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 693 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 727 Score = 114 bits (126), Expect = 9e-21 Identities = 82/95 (86%), Gaps = 11/95 (12%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 9985 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 10044 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||| |||||||||||||||| Sbjct 10045 TAATCCATTCATG------ACTAATTAGATGACGA 10073 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 2631 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 2690 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 2691 GCCAATATTTAGCTTTA 2707 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 11969 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 12028 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 12029 GCCAATATTTAGCTTTA 12045 >seq1 Length=3640883 Score = 131 bits (144), Expect = 1e-25 Identities = 133/172 (77%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCG 6291 ||||| | ||||| || || ||||| || ||||| |||||| ||||||| | || |||| Sbjct 342543 CCAAGATAGAGGGAAAAGGGAACGGCATCAAAACTGTCATTCCCAACATGTCCGACGTCG 342602 Query 6292 CTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351 | ||||||| | || || ||||||| || ||||| | || || |||||||| |||| Sbjct 342603 CCCGGGCGCTCAGTCGGCCGCCCACCTATCCCACGAAGTTCTTTGGCTGCGAACTCGGCG 342662 Query 6352 CTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCA 6403 ||||||| |||||| || || ||||| |||| |||||||||||| |||| Sbjct 342663 CTCAGACTTCGTTTGA-CAAAAGAACGACCGCTACATCGTTAACGGCGCGCA 342713 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/211 (69%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 38108 CACCAA-ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGT 38166 |||||| ||||||||| |||||| || || ||||||||||| | ||| | || | Sbjct 1684804 CACCAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGAAAGTGTACGACCATCCT 1684745 Query 38167 CTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCA 38226 | | ||| ||||| || || || ||||| || || || | || | || || |||||| Sbjct 1684744 CGAGTTGCTTTCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCT 1684685 Query 38227 TAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTT 38286 || ||| |||||| || | || || || | ||| || || | || ||||| | Sbjct 1684684 GGATCTTTGCCTTCACGTTGTCGATTGTGTCAGAAGATTCGACCTCAAGAGTGATAGTCT 1684625 Query 38287 TACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || ||||| || ||||| || || ||||| Sbjct 1684624 TGCCAGTCAAAGTCTTCACAAAAATTTGCAT 1684594 >seq101 Length=2387 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1413 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 1472 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 1473 GCCAATATTTAGCTTTA 1489 >seq25 Length=839721 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || |||||||| ||||| ||||| ||||||||||| | || | || || ||||| Sbjct 326874 TGGAGAGTGCTTTCCTTCTGAATGTTGTAATCAGAGAGCGTGCGACCATCCTCCAATTGC 326933 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || || || ||||| || | |||| ||| || |||||| ||| || Sbjct 326934 TTGCCAGCAAAGATGAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTC 326993 Query 38235 TGCTTCACATTCTGGACAGTATCTCCAC-TTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 |||||| || | || || || | || ||||| || | ||||| || || ||||| Sbjct 326994 GCCTTCACGTTATCGATGGTGTC-CGACGACTCAACCTCAAGAGTAATCGTCTTGCCCGT 327052 Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317 || ||| || ||||| |||||||| Sbjct 327053 CAGGGTCTTGACGAAGATCTGCAT 327076 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | |||||| |||| ||||| ||||||||||| || |||||||| || || Sbjct 326566 CCACCGCGGAGACGCAAGACCAGGTGAAGCGTGCTCTCCTTCTGGATATTGTAGTCGGAA 326625 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| |||| || | || || |||||||| || ||||| || || || | || Sbjct 326626 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGA 326685 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAAC 38269 | ||| || || ||| ||| || ||| || || | || || || | || ||||| Sbjct 326686 ATGCCCTCCTTATCCTGAATCTTCGCCTTGACGTTGTCGATGGTGTC-CGACGACTCAAC 326744 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || ||||| ||||| || || ||||| ||||||||| Sbjct 326745 CTCGAGGGTGATCGTCTTACCAGTCAACGTCTTAACGAAAATCTGCATG 326793 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/211 (69%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 38109 ACCAA-ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||| ||| | ||||||||||| || |||||||| ||||| | | || | || || Sbjct 327428 ACCAAGATGCAACGTGCTCTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCTC 327487 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | || || || || || |||||||| || || |||| || | |||||| || ||| Sbjct 327488 GAGCTGCTTGCCCGCGAAGATTAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTG 327547 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| || ||| ||||| | || || || || || || | || ||||| || Sbjct 327548 AATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATAGTCTT 327607 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||||||| || || || || ||||||||| Sbjct 327608 CCCCGTCAACGTCTTGACAAAGATCTGCATG 327638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946681564537