Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 113 6e-20 seq1 91.5 2e-13 >seq3 Length=2745113 Score = 113 bits (124), Expect = 6e-20 Identities = 168/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| | ||||||||||||| |||||| || |||||||| || || |||||||| || Sbjct 2542906 GTGCATACCCTCGTCACGGCTGATGAGCTCGTTCGAGAACGTGAGGCCAGGCATGAGTCC 2542847 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| |||| || ||||| ||||| ||||| ||||| || Sbjct 2542846 ACGCTTCTTGAGCCAGAATATCGATGCGAAAGAGCCGGAGAAAAAGATACCCTCTACGGC 2542787 Query 127651 CGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACT-TTGT-ATCAAACCACTTCAT 127707 ||||| || | |||||||| || |||| || | || |||| | | ||| || Sbjct 2542786 GGCGAAAGCCACAAGACGCTCAGCGAAAGAAGAG---CTCTTGTCAGATATCCAGCGCAA 2542730 Query 127708 CGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 ||||| | |||||| |||| ||| || |||| |||| ||| || || || || Sbjct 2542729 AGCCCAGTCTGCCTTCTTCTTGATGCAAGGGATAGTCTCGATGGCGTCGAACAG 2542676 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||| ||| |||||| || || ||||| ||| || |||||||| || |||||| Sbjct 2540528 CCCTCGTCGCGGCTGATGAGCTCGTTAGAGAACGTCAGCCCGGGCATGAGTCCGCGCTTC 2540587 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | || || || ||||||||||| || |||||| ||||| Sbjct 2540588 TTGAGCCAGAATATTGACGCGAAGGATCCGGAGAAGAAGATGCCTTCCACAGCGGCGAAA 2540647 Query 127658 GCAAATAGACGCTCGGCAAA 127677 |||| || ||||| |||| Sbjct 2540648 GCAACGAGCCGCTCCCCAAA 2540667 >seq1 Length=3640883 Score = 91.5 bits (100), Expect = 2e-13 Identities = 84/105 (80%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 176818 CTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAAC 176877 ||| || ||||||||||| || ||||||| ||||||||||| ||| ||||| || || Sbjct 412166 CTTTCCACGGAGAGGGAAGACGCCGTAGTTGTCACGACCAACAACACCCAGACCTGCGAC 412225 Query 176878 TGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACA 176922 || || || || |||||||| ||||| || | |||||||||||| Sbjct 412226 CGCTAGCGTTTTGGCGGAATC-CCCTCGGTAAGGATGAGCGTACA 412269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506226057320