Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq25 152 1e-31 seq1 129 1e-24 seq6 84.2 5e-11 >seq25 Length=839721 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || |||||||| ||| ||| || || |||||||| |||| ||| || | Sbjct 326574 GAGACGCAAGACCAGGTGAAGCGTGCTCTCCTTCTGGATATTGTAGTCGGAAAGCGTACG 326633 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || || |||||||| || || ||||| || || || ||||| ||||||||||| || Sbjct 326634 ACCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTC 326693 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || ||||| || ||||||||| || ||||||||||| || || || ||||| Sbjct 326694 CTTATCCTGAATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCAACCTCGAGGGT 326753 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||| || ||||| || || ||||| | ||||| Sbjct 326754 GATCGTCTTACCAGTCAACGTCTTAACGAAAATCTGCAT 326792 Score = 145 bits (160), Expect = 2e-29 Identities = 157/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 |||| || | ||| ||| || || |||||||| || | |||||| | ||||| |||| Sbjct 327430 CAAGATGCAACGTGCTCTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCTCGA 327489 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 ||||||| || |||||||| || || || ||||| |||||||||||||| || || |||| Sbjct 327490 GCTGCTTGCCCGCGAAGATTAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGAA 327549 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | || |||||| || || |||||||| || ||||| |||||||| | ||||| | Sbjct 327550 TCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATAGTCTTCC 327609 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || || || | ||||| Sbjct 327610 CCGTCAACGTCTTGACAAAGATCTGCAT 327637 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 ||||||| |||||| || || ||||| |||||||| | || || | ||||| || | Sbjct 326869 CAAGGTGGAGAGTGCTTTCCTTCTGAATGTTGTAATCAGAGAGCGTGCGACCATCCTCCA 326928 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 ||||| || || ||||| || || |||||||| ||||| ||||| || ||||| |||| Sbjct 326929 ATTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGAA 326988 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | || ||| ||||| || ||||||||||| || || ||||| |||| |||||| | Sbjct 326989 TCTTCGCCTTCACGTTATCGATGGTGTCCGACGACTCAACCTCAAGAGTAATCGTCTTGC 327048 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCATT 195141 | |||| || || ||||| | |||||| Sbjct 327049 CCGTCAGGGTCTTGACGAAGATCTGCATT 327077 >seq1 Length=3640883 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 |||||||||| || |||||| ||||| || ||||||| || || | ||| || || | Sbjct 1685310 CAAGGTGAAGGGTACTCTCTTTCTGAATGTTATAATCGGAGAGCGTACGCCCGTCCTCCA 1685251 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 |||||| || |||||||| || || || || || |||||||||||||| ||||| || | Sbjct 1685250 ACTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGA 1685191 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | ||| ||| ||||| ||||| || ||||| || || || | ||| | ||||| | Sbjct 1685190 TCTTTGCCTTCACGTTGTCAATTGTATCCGACGACTCGACCTCCAAGGTGATAGTCTTCC 1685131 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCATT 195141 | |||| || || || || | |||||| Sbjct 1685130 CCGTCAGCGTCTTCACAAAGATCTGCATT 1685102 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || ||||| || ||||| || ||||| ||||| |||| || || | || || || Sbjct 1684294 AACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTC 1684235 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || || ||||| || || || ||||| ||||| || || || || || || Sbjct 1684234 GAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTG 1684175 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| ||| ||||| || || ||||| || || |||||||| |||| |||||| Sbjct 1684174 AATCTTTGCCTTCACGTTGTCGATTGTGTCGGATGACTCGACTTCAAGCGTAATCGTCTT 1684115 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 1684114 CCCCGTAAGGGTCTTGACAAAGATCTGCAT 1684085 >seq6 Length=2010026 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| || || || ||||||||| | ||| | ||||| ||| Sbjct 1330051 ACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGCTCAAAGTGCGACCATCCTCG 1330110 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAAT 195035 |||||||| || |||||||| || || |||||||| ||||| || Sbjct 1330111 AGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTCGGGAGGGAT 1330154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109479794665409