Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1 105 5e-18 seq25 104 2e-17 >seq1 Length=3640883 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | |||||||||||| || || || || ||||| |||| || || | | | Sbjct 1684300 ACGAAGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCC 1684241 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | ||||| || ||||| || | ||||| || ||||| || || || || || Sbjct 1684240 GTCCTCGAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATACCCTCCTT 1684181 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||| ||||| ||| || || | || | ||||| || | || |||||||| || | Sbjct 1684180 ATCCTGAATCTTTGCCTTCACGTTGTCGATTGTGTCGGATGACTCGACTTCAAGCGTAAT 1684121 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || || || | || || ||||| |||||||| Sbjct 1684120 CGTCTTCCCCGTAAGGGTCTTGACAAAGATCTGCAT 1684085 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||| | ||| | |||||| ||||| || || || ||||| ||||| | Sbjct 1685103 TTCCACCACGCAGACGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATATTATAATCAG 1685044 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | | || || | || || || || || |||| ||||||||||| || | Sbjct 1685043 AAAGAGTACGACCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGGCGCTGTTGATCAGGAG 1684984 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | ||||| || || || || || || || || | || | ||||| || | || | Sbjct 1684983 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGA 1684924 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || ||||||| |||||| || || || || || ||||| || ||||| Sbjct 1684923 CCTCGAGAGTGATCGTTTTCCCTGTCAAGGTCTTCACAAAGATTTGCAT 1684875 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||| ||||| || || || ||||||| || || | | || ||||| ||| Sbjct 1685305 TGAAGGGTACTCTCTTTCTGAATGTTATAATCGGAGAGCGTACGCCCGTCCTCCAACTGC 1685246 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | |||||| ||||| || ||||||||||| || || || || ||| Sbjct 1685245 TTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTT 1685186 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | || || |||| || || || | |||| || || || || Sbjct 1685185 GCCTTCACGTTGTCAATTGTATCCGACGACTCGACCTCCAAGGTGATAGTCTTCCCCGTC 1685126 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 1685125 AGCGTCTTCACAAAGATCTGCAT 1685103 >seq25 Length=839721 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 101278 TTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAA 101337 ||| || || || |||||||| | || || | |||| ||||||||||| || ||||| Sbjct 326885 TTCCTTCTGAATGTTGTAATCAGAGAGCGTGCGACCATCCTCCAATTGCTTGCCAGCAAA 326944 Query 101338 TATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAAT 101397 || | ||||||||| || || || ||||| || || || ||||| || || || | Sbjct 326945 GATGAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTT 327004 Query 101398 TTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTAC 101457 || | ||||| |||| || || |||||||| | ||| ||||| || | || || || Sbjct 327005 ATCGATGGTGTCCGACGACTCAACCTCAAGAGTAATCGTCTTGCCCGTCAGGGTCTTGAC 327064 Query 101458 AAATATCTGCAT 101469 || |||||||| Sbjct 327065 GAAGATCTGCAT 327076 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338 || || || |||||||| || | | ||| | | |||| || | ||||| || || || Sbjct 327447 TCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAG 327506 Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398 || | ||||| || ||||| ||||||||||| ||||| ||||| || || ||| | Sbjct 327507 ATTAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGAATCTTCGCCTTGACATTG 327566 Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458 || | ||||| || | ||||| ||||| |||| || || || || || || || ||| Sbjct 327567 TCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATAGTCTTCCCCGTCAACGTCTTGACA 327626 Query 101459 AATATCTGCATG 101470 || ||||||||| Sbjct 327627 AAGATCTGCATG 327638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396277786635339