Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq15 98.7 6e-15 seq1 91.5 1e-12 seq18 86.0 4e-11 >seq15 Length=1308937 Score = 98.7 bits (108), Expect = 6e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | ||||| || || || || |||||| | ||||| ||||| || ||||||| Sbjct 754389 ATGCTGTCGTCACTGTCCCTGCGTACTTCAATGATGCGCAACGGCAAGCGACCAAAGATG 754448 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | |||||| |||||| |||| || || | || || || || || || ||||| | Sbjct 754449 CAGGTACAATTGCCGGTCTTGATGTCTTGCGGGTGATCAACGAGCCCACTGCGGCCGCTC 754508 Query 474855 TTGCTTATGGTCTTGAT 474871 | || |||||||||||| Sbjct 754509 TCGCATATGGTCTTGAT 754525 >seq1 Length=3640883 Score = 91.5 bits (100), Expect = 1e-12 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||||||||| ||| || || | || ||||||| || || | ||| || | Sbjct 1684801 CAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGAAAGTGTACGACCATCCTCGA 1684742 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 ||||||||||||| ||||| || || || || ||||||||||| || |||||||| || | Sbjct 1684741 GTTGCTTTCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGA 1684682 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 ||||| || || || || || |||| | ||||| || ||||| || | Sbjct 1684681 TCTTTGCCTTCACGTTGTCGATTGTGTCAGAAGATTCGACCTCAAGAGTGATAGTCTTGC 1684622 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 | || | |||||| || |||||||| Sbjct 1684621 CAGTCAAAGTCTTCACAAAAATTTG 1684597 Score = 89.7 bits (98), Expect = 3e-12 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| ||||| ||||| ||||| || |||||||| | || || | || || | Sbjct 1685310 CAAGGTGAAGGGTACTCTCTTTCTGAATGTTATAATCGGAGAGCGTACGCCCGTCCTCCA 1685251 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 ||||||||||| || || ||||| || ||||| |||||||| ||||||||||| || | Sbjct 1685250 ACTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGA 1685191 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTA 480743 ||||| || || ||||| ||||| | | | | | ||| ||| ||||| || Sbjct 1685190 TCTTTGCCTTCACGTTGTCAATTGTATCCGACGACTCGACCTCCAA-GGTGATAGTCTTC 1685132 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || || || || Sbjct 1685131 CCCGTCAGCGTCTTCACAAAGATCTG 1685106 >seq18 Length=715188 Score = 86.0 bits (94), Expect = 4e-11 Identities = 114/157 (73%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 474336 GTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAAA 474395 ||| ||||| || | | |||||||||| || | |||||||||||| | | || || | Sbjct 272435 GTACTGATTCAGTTATT-CTTACAGTTGCGTCGGTGTTTGGCAAAACGATCGTGTTGAGA 272377 Query 474396 TAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTG 474455 | |||||||| ||||| ||||| |||||||||| ||||| || || || | || | | Sbjct 272376 TCATTGCCAACGACCAGGGTAACCGAACAACACCCTCATACGTCTCATTCTCCGACAACG 272317 Query 474456 AACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 | | | ||||| ||||| || || | |||| ||| Sbjct 272316 AGCGGTTGATTGGCGATGCCGCGAAGAACCAAGTTGC 272280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268173752353796