Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3 149 8e-30 seq19 104 3e-16 seq4 93.3 5e-13 seq1 87.8 2e-11 >seq3 Length=2745113 Score = 149 bits (164), Expect = 8e-30 Identities = 150/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||||| ||| || || ||| |||||| |||||||||||||| | ||||| || Sbjct 2540155 CGCCTTGGAGTAGTCCGAAACACGCTTCTCGAAGAAGTTGGTCTTGCCTTGCAGCGATAT 2540214 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 | ||||| | ||| ||||| | || ||||||||||| | |||||||| | Sbjct 2540215 GAGGTCCATGAAGTCGAAGGGGTTCGACGAGTTGTAGTGCTTCGGGTTCCCGAGCGAGAC 2540274 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 || |||||||||||||| |||||||||||||| |||||||| ||||||||||||||| Sbjct 2540275 CAGGAGGCGGTCGGCGACGAACTCGATGTACTGACACATGAGCGAGGCGTTCATGCCGAT 2540334 Query 868870 GAGCGCCACCGGCAG 868884 ||||| || ||||| Sbjct 2540335 GAGCGAGACGGGCAG 2540349 Score = 136 bits (150), Expect = 5e-26 Identities = 209/292 (72%), Gaps = 17/292 (6%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||||| | ||||| || | |||||| |||||||| || ||||| Sbjct 2542900 ACCCTCGTCACGGCTGATGAGCTCGTTCGAGAACGTGAGGCCAGGCATGAGTCCACGCTT 2542841 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AA 869297 ||||||||| || || | |||| ||| ||||||||||| ||||| |||||||| || Sbjct 2542840 CTTGAGCCAGAATATCGATGCGAAAGAGCCGGAGAAAAAGATACCCTCTACGGCGGCGAA 2542781 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCG 869354 |||| | || ||||| || || || | || ||||| ||||| || | Sbjct 2542780 AGCC-ACAAGACGCTCAGCGAA-----AGAAGAGCT-CTTGTCAGATATCCAGCGCAAAG 2542728 Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC-- 869412 ||||||| ||||| ||| | | | || | || ||||||||| || ||||| || Sbjct 2542727 CCCAGTCTGCCTTCTTCTTGATGCAAGGGATAGTCTCGATGGCGTCGAACAGGTGTTCGC 2542668 Query 869413 -CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || ||| |||||||||| |||||||||||||| ||||| |||||||| Sbjct 2542667 GCTGCTCG---GGGTCCTTGATATAGGTGTCGATCAACAGCGAGTAGGTCTC 2542619 Score = 116 bits (128), Expect = 5e-20 Identities = 206/296 (70%), Gaps = 11/296 (4%) Strand=Plus/Plus Query 869172 TATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGC 869231 ||||| || |||||||| ||||| | ||||| || | || ||||||||||| | Sbjct 2540520 TATGCATGCCCTCGTCGCGGCTGATGAGCTCGTTAGAGAACGTCAGCCCGGGCATGAGTC 2540579 Query 869232 CGCGCTTCTTGAGCCAAAAGA-TGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACG 869290 |||||||||||||||| || | || ||| ||| || ||||| |||||||| || || Sbjct 2540580 CGCGCTTCTTGAGCCAGAATATTGACGC-GAAGGATCCGGAGAAGAAGATGCCTTCCACA 2540638 Query 869291 GCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG---ATCCAC 869347 ||||| || | | ||||||||| |||| | ||| | ||||| | ||||| Sbjct 2540639 GCGGCGAAAGCAACGAGCCGCTCCCCAAA--TACCGA----CGTCTTGTCGGATATCCAG 2540692 Query 869348 TTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGG 869407 || |||||||||||| || ||| | | | || | | | ||||| | |||| Sbjct 2540693 CGCAGCGCCCAGTCGGCTTTCTTCTTGATGCAAGGAATGGAGGTTATGGCATTGAGGAGG 2540752 Query 869408 TGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || || ||| | ||||| |||| || |||||||| || ||||| |||||||| Sbjct 2540753 TGATCACGCTCGTCAGGGTCTTTGATGTATGTGTCGATGAGTAGCGAGTAGGTCTC 2540808 Score = 107 bits (118), Expect = 2e-17 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| | ||| || |||||| |||||| ||||| |||||||| | ||||||||| Sbjct 2543266 GCCTTCGAGTAGTCTGAGACGCGCTTCTCGAAGAAGTTCGTCTTGCCTTGCAGCGAGATC 2543207 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||| | ||| ||||| | || |||||| ||| | ||||| | | Sbjct 2543206 ATATCCATAAAGTCGAAAGGGTTCGTCGCGTTGTAGATCTTAGGGTTACCGAGGGCAACC 2543147 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | ||| || ||||| || ||||||||||||||||||||||| ||||||||||| ||| Sbjct 2543146 ACCAGACGATCGGCAACGAACTCGATGTACTGGCACATGAGCGTCGCGTTCATGCCAATG 2543087 Query 868871 AG 868872 || Sbjct 2543086 AG 2543085 Score = 95.1 bits (104), Expect = 1e-13 Identities = 173/251 (69%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || |||||||||||||| ||| | |||| || | || Sbjct 2542617 GAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCAGCGTGCCTCAGCGGCCTGA 2542558 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| || ||| || || | |||||||| ||||| ||||| ||||| ||| Sbjct 2542557 ACCTCGTTGGAGAAACGCTCGACAAGGTTCTCATTGACGATACCGTCCGACGCGGCAAAA 2542498 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG-CGA--CACCCAGTGG 869809 || || ||||| || ||| || |||||||||| | |||| ||| ||||| | Sbjct 2542497 AACGCGAGGACATGGGAGATGAAAAAGCGCTCGTCGGCATTGAGACGATTGTTCCAGTCG 2542438 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | || | ||| |||| |||||| || ||||||| || || || ||||| ||| Sbjct 2542437 TGCATATCCTTGGAGAGATCCATCTCCTCTGCAGTCCAGAAGGAAGCTTCCGCCTTCTTG 2542378 Query 869870 TACATCTCCCA 869880 ||||| | ||| Sbjct 2542377 TACATGTTCCA 2542367 Score = 93.3 bits (102), Expect = 5e-13 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || |||||||||||||| ||| || |||| || |||| Sbjct 2540810 GAGTGGATGTTCTCTATCATTATCTGGAAGCCGTAGAAGCATCTTGCCTCAGCAGCTTGA 2540869 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| || ||| || || | || || ||| ||| ||||||||| ||||||||| Sbjct 2540870 ACCTCGTTAGAGAAGCGCTCGACGAGATTTTCGTTCACTATGCCGTCGGAGGCGGCGAAG 2540929 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGT 869786 ||||| | ||| | | ||| |||| ||||||| Sbjct 2540930 AAAGCTAAGACATTCGAGATGAAGTACCGCTCGT 2540963 >seq19 Length=1138767 Score = 104 bits (114), Expect = 3e-16 Identities = 258/381 (68%), Gaps = 12/381 (3%) Strand=Plus/Plus Query 1726725 CCACGCTCCCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCT 1726784 |||| | || || ||| |||||||||||| | | || || || || |||| | || Sbjct 908221 CCACAGTACCATCCGTGGAGTTCTTGAAGCCCGTCGGCATCGAGAGCGCAGACGTGAGCT 908280 Query 1726785 CGCGGTGCACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTG 1726844 ||||||||||||| ||| |||||||||||||| | |||||||||| || ||||| | Sbjct 908281 CGCGGTGCACCTGCGACTCCGTCGTGCGCGCGCCGATCGCGCCCCACGAGACGAGGTCCG 908340 Query 1726845 CCAAATAAGGGGCCACCAGAGGACTGAGAAACTCGACGGCCA-CGGGCTGATCGACGGCG 1726903 | || | | | | | ||| |||||| | |||| | ||| | | | | Sbjct 908341 CGGTGTACTGCGGCGTGATCGTGTCGAGGAACTCG-CAGCCAGCCGGCAGGCC--CATCT 908397 Query 1726904 ACGACGAGATCGCGCAACAG-GCG-GCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACG 1726961 || |||| ||| ||| ||| | | |||||| || |||||| | | | || | Sbjct 908398 TCG-CGAGGTCGAGCAGCAGCGTGCGCGCGATGC--GCAGGCCCTTGTTGATCTGGAAGC 908454 Query 1726962 ACCCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTT 1727021 |||| | ||| |||||| || |||||||||||||||||| || || |||||||| | Sbjct 908455 TGCCGTTCATGTCCGGGTCGTTGATCAGGCCCTTCCACCCGACCGTGGTACGCGGCTTCT 908514 Query 1727022 CGACATAGGCGCGCATGACCACGCAAAGCGCGTCGCCGACCTCGTCTCGGACAAAGGCGC 1727081 ||| ||| | ||||||| | | || |||| || ||| ||||| | |||| | Sbjct 908515 CGAAGTAGACTCGCATGATGATGTGCAGGTCGTCTGCGGCCT--GCTCGG-CGTAGGCTC 908571 Query 1727082 GCAGGCGTCGGCCATAGTCGA 1727102 |||| || ||| | || |||| Sbjct 908572 GCAGCCGGCGGGCGTACTCGA 908592 >seq4 Length=2243620 Score = 93.3 bits (102), Expect = 5e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 1254438 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGAC 1254497 ||||| || |||| || || | || |||||||| |||||||||| || | ||||| | Sbjct 394081 GCCTCCGTCGCGATCCGCTCAAAGATATCGTTGACGAACGAGTTCAGGATGGCCATCGCC 394022 Query 1254498 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1254538 ||||| ||||| ||| ||| |||||||||||||||||||| Sbjct 394021 TTGTTCGAGATACCCGTGTCAGGGTGCACCTGCTTGAGCAC 393981 >seq1 Length=3640883 Score = 87.8 bits (96), Expect = 2e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGC 19112 ||||| || || | || |||||| ||| ||||| ||||| || |||||||| | Sbjct 427945 ATCGGTGGGACCATCACTTGCGTGGTCCGCGGAGTGCCTGCAGGACTGGGCGAGCCCGTC 428004 Query 19113 TTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGA 19172 || |||||| | ||||| ||| || ||||| ||||| || ||||| ||||| || || Sbjct 428005 TTCGACAAGCTAGAGGCGAAGCTGGCGCACGCGATGCTCTCTATCCCCGCCACAAAAGGC 428064 Query 19173 TTCGAGATTGG 19183 ||||||||||| Sbjct 428065 TTCGAGATTGG 428075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107128777785259