Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 113 6e-20 seq1 98.7 1e-15 >seq3 Length=2745113 Score = 113 bits (124), Expect = 6e-20 Identities = 168/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| | ||||||||||||| |||||| || |||||||| || || |||||||| || Sbjct 2542906 GTGCATACCCTCGTCACGGCTGATGAGCTCGTTCGAGAACGTGAGGCCAGGCATGAGTCC 2542847 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| |||| || ||||| ||||| ||||| ||||| || Sbjct 2542846 ACGCTTCTTGAGCCAGAATATCGATGCGAAAGAGCCGGAGAAAAAGATACCCTCTACGGC 2542787 Query 130147 CGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACT-TTGT-ATCAAACCACTTCAT 130203 ||||| || | ||||||||||| |||| || | || |||| | | ||| || Sbjct 2542786 GGCGAAAGCCACAAGACGCTCAGCGAAAGAAGAG---CTCTTGTCAGATATCCAGCGCAA 2542730 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 ||||| | ||||| |||| ||| || |||| |||| ||| || || || || Sbjct 2542729 AGCCCAGTCTGCCTTCTTCTTGATGCAAGGGATAGTCTCGATGGCGTCGAACAG 2542676 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||| ||| |||||| || || ||||| ||| || |||||||| || |||||| Sbjct 2540528 CCCTCGTCGCGGCTGATGAGCTCGTTAGAGAACGTCAGCCCGGGCATGAGTCCGCGCTTC 2540587 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | || || || ||||||||||| || |||||| ||||| Sbjct 2540588 TTGAGCCAGAATATTGACGCGAAGGATCCGGAGAAGAAGATGCCTTCCACAGCGGCGAAA 2540647 Query 130154 GCAAAGAGACGCTCAGCAAA 130173 |||| ||| ||||| |||| Sbjct 2540648 GCAACGAGCCGCTCCCCAAA 2540667 >seq1 Length=3640883 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 11/196 (6%) Strand=Plus/Plus Query 179869 TGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTT-----TGATGTGAGTT 179923 || || || ||||| |||||||||| | | || ||| | ||| |||| ||| | Sbjct 412080 TGCTGCAGTCCCAAAATCTTCTTGATGTTCTGGATCTCCTCGTTCTTCATGATCTGA-TC 412138 Query 179924 GCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGT 179983 | || | |||||||| || || ||| |||||||||||||| || ||||||| Sbjct 412139 GTGCTTC----GCATCTCGCACGTTCAGGAGCTTTCCACGGAGAGGGAAGACGCCGTAGT 412194 Query 179984 GATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCG 180043 ||||||||||| ||| ||||| || || || || || || |||||||| ||||| | Sbjct 412195 TGTCACGACCAACAACACCCAGACCTGCGACCGCTAGCGTTTTGGCGGAATC-CCCTCGG 412253 Query 180044 TCACGATGAGCGTACA 180059 | | |||||||||||| Sbjct 412254 TAAGGATGAGCGTACA 412269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434218234120