Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3 147 2e-30 seq11 109 6e-19 >seq3 Length=2745113 Score = 147 bits (162), Expect = 2e-30 Identities = 352/527 (67%), Gaps = 8/527 (2%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| ||||| ||| | ||| |||||| | | |||||||| || ||| || || Sbjct 2542374 TGTACAAGAAGGCGGAAGCTTCCTTCTGGACTGCAGAGGAGATGGATCTCTCCAAGGATA 2542433 Query 59653 TGAAGGATTGGGACAAGC---TCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGG 59709 || | || ||| |||| | ||||| |||||||| ||||||| ||||| | Sbjct 2542434 TGCACGACTGGAACAATCGTCTCAATGCCGACGAGCGCTTTTTCATCTCCCATGTCCTCG 2542493 Query 59710 CCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGG 59769 | || || || ||| || || || || | || || | | | | || ||||| | Sbjct 2542494 CGTTTTTTGCCGCGTCGGACGGTATCGTCAATGAGAACCTTGTCGAGCGTTTCTCCAACG 2542553 Query 59770 ATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCC 59829 | || ||| || ||||| || | ||||||| | ||| | | ||| |||| Sbjct 2542554 AGGTTCAGGCCGCTGAGGCACGCTGCTTCTACGGCTTCCAGATTATGATGGAGAACATCC 2542613 Query 59830 ACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTG 59889 |||||||||| |||||||| ||||||| | | ||||||| || || || | Sbjct 2542614 ACTCCGAGACCTACTCGCTGTTGATCGACACCTATATCAAGGACCCCGAGCAGCGCGAAC 2542673 Query 59890 GTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATG 59948 |||||| ||||| ||||| |||| ||| | || | || ||||| ||||| || Sbjct 2542674 ACCTGTTCGACGCCATCGAGACTATCCCTTGCA-TCAAGAAGAAGGCAGACTGGGCTTTG 2542732 Query 59949 CAGTGGATGAGTC-CTGGAGCA--TCATTTGCACAACGTCTCATAGCTTTTGCATGCGTG 60005 | ||||| | | |||| || || || | ||||| | ||||| || ||| Sbjct 2542733 CGCTGGATATCTGACAAGAGCTCTTCTTTCGCTGAGCGTCTTGTGGCTTTCGCCGCCGTA 2542792 Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 || || ||||| ||||| ||||| ||| | || ||||||||||| |||||||| ||| Sbjct 2542793 GAGGGTATCTTTTTCTCCGGCTCTTTCGCATCGATATTCTGGCTCAAGAAGCGTGGACTC 2542852 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 ||||| ||||| | ||||| |||||||| || ||| |||||||| Sbjct 2542853 ATGCCTGGCCTCACGTTCTCGAACGAGCTCATCAGCCGTGACGAGGG 2542899 Score = 129 bits (142), Expect = 6e-25 Identities = 344/518 (66%), Gaps = 16/518 (3%) Strand=Plus/Minus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGC-- 59670 || |||||| | || || ||||| ||||| || || || | || ||| || | | Sbjct 2541033 TCTTTCTGGACAGTAGAAGAGATCGACCTATCCCATGATCTCACAGACTGGAACGACCGT 2540974 Query 59671 -TCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGAT 59729 ||||| | |||||| | | |||||| || ||| | || |||||||| || || Sbjct 2540973 CTCAATGCCAACGAGCGGTACTTCATCTCGAATGTCTTAGCTTTCTTCGCCGCCTCCGAC 2540914 Query 59730 GGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCC 59789 || || |||| |||||| | | | | ||| || || || || || ||| ||||| Sbjct 2540913 GGCATAGTGAACGAAAATCTCGTCGAGCGCTTCTCTAACGAGGTTCAAGCTGCTGAGGCA 2540854 Query 59790 CGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTC 59849 | | ||||||| | ||| | | ||| |||||||||||||| |||||||| Sbjct 2540853 AGATGCTTCTACGGCTTCCAGATAATGATAGAGAACATCCACTCCGAGACCTACTCGCTA 2540794 Query 59850 ATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAG 59909 | ||||| | | |||| || || || ||| | | || || ||||||| Sbjct 2540793 CTCATCGACACATACATCAAAGACCCTGACGAGCGTGATCACCTCCTCAATGCCATA--- 2540737 Query 59910 ACGTCCC--CC--GCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGG 59965 || ||| || ||| | || | ||||| || ||||| ||| ||||| | | Sbjct 2540736 ACCTCCATTCCTTGCA-TCAAGAAGAAAGCCGACTGGGCGCTGCGCTGGAT-ATCCGACA 2540679 Query 59966 AG-CATC---ATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCT 60021 || | || ||||| | || ||| | ||||| || |||||||| |||||||||| Sbjct 2540678 AGACGTCGGTATTTGGGGAGCGGCTCGTTGCTTTCGCCGCTGTGGAAGGCATCTTCTTCT 2540619 Query 60022 CTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTT 60081 | || || ||| | || ||||||||||| ||||| || |||||||| || |||| | Sbjct 2540618 CCGGATCCTTCGCGTCAATATTCTGGCTCAAGAAGCGCGGACTCATGCCCGGGCTGACGT 2540559 Query 60082 TCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCAT 60119 |||| |||||||| || ||| ||||||||| | ||| Sbjct 2540558 TCTCTAACGAGCTCATCAGCCGCGACGAGGGCATGCAT 2540521 >seq11 Length=1765784 Score = 109 bits (120), Expect = 6e-19 Identities = 141/190 (74%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 78199 TAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTG 78258 ||||||||||| |||||||| ||||||||||| || || | ||||||||| | ||| ||| Sbjct 1058240 TAGTACATGCCTGTCTTGAGGCCCTTCTTCCAGCCATAAAAGTGCATACTTGTCAG-TTG 1058182 Query 78259 GCCAG-ACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGA--CTGGTCGATGTACGCA 78315 || | ||||| || || | | ||||| |||| || |||| |||| |||| Sbjct 1058181 CCCCGTTGTCGGGGACTGCAAGTGAACGTTGA--GACTTTGACTCTGGCAGATGAACGCT 1058124 Query 78316 CCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAA 78375 || ||||| || || | |||||||||| |||||| |||||||||| ||| ||| Sbjct 1058123 CCACGGTCCGCAGCGAGGTCGATGACCTTCTTTTGGCTGATCTCCCAGACAGTCTTGTAG 1058064 Query 78376 ATGGCCTTCA 78385 || ||||||| Sbjct 1058063 ATCGCCTTCA 1058054 Score = 96.9 bits (106), Expect = 4e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 79699 GTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATC 79758 || || |||||||| || || |||||||||||||| |||| ||||||| ||| Sbjct 1056514 GTGTCATAGATGCCTTCTATGGAGTCGTCCTTCATGCAAACCAAGAAGCAGGAGCTCATT 1056455 Query 79759 TGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGG 79818 || |||||| ||||| || |||||||| ||||||| || || |||||||| || || Sbjct 1056454 TGAGGGTTGGGGGTACCCGCATTGAAGAGAGTCGGCGATGCATGAGTGAAGAAGCTTCGG 1056395 Query 79819 CTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCG 79878 ||| || | || ||||| || ||||| | || |||||| || || || || Sbjct 1056394 -ACATAAGGTTATAGGTCTCGATGGCGCGCTCAATATCAGAGCCGTGAATACCCACTGCC 1056336 Query 79879 ACGCGCATGAAGAGGTACTG-GGGCGT 79904 || ||||| || | | ||| |||||| Sbjct 1056335 ACACGCATCAACATATGCTGAGGGCGT 1056309 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 19410 CCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGG 19469 || |||| |||||||| ||||| |||| || | || || || | || || | |||| Sbjct 1056669 CCAACGGCATCGTCCCGATGCTTCGCGCCTACGACGCGACTGCTCGATATGTAGATCAGG 1056728 Query 19470 GGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCA 19529 | ||| ||| || ||| | ||||| |||||| | ||||| |||||||| || || Sbjct 1056729 GAGGCAACAAGCGGCCCGGCGCATTCGCGATCTACATTGAGCCCTGGCACGCTGATGTTT 1056788 Query 19530 TGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCT 19589 | || |||||||| || || |||||| || | ||||| | ||| ||| || || | Sbjct 1056789 TCGAATTCCTCGACCTTCGTAAGAACCATGGCAAAGAGGAAGTCCGCGCTCGGGATCTGT 1056848 Query 19590 TCACGGCCTTGTGGATTCCGGACCTATT 19617 | || | ||||||||||||||||| Sbjct 1056849 TTTATGCTCTTTGGATTCCGGACCTATT 1056876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523929216880